Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
NPIPA3F8WFD2 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
NPIPA3F8WFD2 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
NPIPA3F8WFD2 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
NPIPA3F8WFD2 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
NPIPA3F8WFD2 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
NPIPA3F8WFD2 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 FAM86MP-201ENST00000340703 885 ntBASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 ACKR1-201ENST00000368121 1240 ntBASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 FAM21FP-201ENST00000426241 1131 ntBASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 RN7SL219P-201ENST00000582872 296 ntBASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 AC244669.2-201ENST00000612320 853 ntBASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.94□□□□□ -0.18
NPIPA3F8WFD2 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 API5-202ENST00000420461 2009 ntTSL 2 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 AC046158.3-201ENST00000624947 2558 ntBASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 FO681548.1-201ENST00000455617 1132 ntBASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 AC022137.2-201ENST00000503482 481 ntBASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 AL583810.1-201ENST00000553344 1045 ntBASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 AL138799.1-201ENST00000448213 1675 ntBASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
NPIPA3F8WFD2 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms