Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 AC093433.1-201ENST00000458048 571 ntBASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 AP001582.1-201ENST00000525856 295 ntBASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 AL022328.1-201ENST00000610050 478 ntBASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 WASH3P-207ENST00000560956 1394 ntBASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 AL138799.1-201ENST00000448213 1675 ntBASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 MSTO2P-201ENST00000314835 1709 ntBASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A3BPQ9Y5P4 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
COL4A3BPQ9Y5P4 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 AC005229.1-201ENST00000392885 409 ntBASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 BAATP1-201ENST00000412284 1225 ntBASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 AC004066.1-201ENST00000502488 802 ntBASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 AP001889.1-201ENST00000525414 633 ntBASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 MIR6805-201ENST00000615055 62 ntBASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A3BPQ9Y5P4 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms