Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 AC099063.4-201ENST00000641099 1602 ntBASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 AL390039.1-201ENST00000399148 611 ntBASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 DOC2GP-202ENST00000514950 1163 ntBASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 CLIC4P2-201ENST00000601934 717 ntBASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 AC004840.1-201ENST00000636359 365 ntBASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 REXO1L2P-201ENST00000425429 2069 ntBASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 AC013726.1-201ENST00000563747 2285 ntBASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VPS9D1Q9Y2B5 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 TPRX2P-201ENST00000535362 881 ntBASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 AL096869.2-202ENST00000557007 1237 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 AC104794.3-201ENST00000566840 1248 ntBASIC15.3■□□□□ 0.04
VPS9D1Q9Y2B5 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms