Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 AC006001.1-201ENST00000325130 474 ntBASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 AC006033.1-201ENST00000440505 426 ntBASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 AL138709.1-201ENST00000614840 1693 ntBASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 MARS-233ENST00000628866 2583 ntTSL 5 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RPAP1Q9BWH6 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 AC023908.3-201ENST00000564211 3047 ntBASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 KRT18P25-201ENST00000508931 1278 ntBASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 IGHV3OR16-16-201ENST00000563644 343 ntBASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RPAP1Q9BWH6 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 LINC01101-201ENST00000622953 1884 ntBASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 GPAA1P2-201ENST00000417923 928 ntBASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 AC023310.1-201ENST00000554836 735 ntBASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 AC138951.2-201ENST00000623455 1161 ntBASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 AL139099.5-201ENST00000635274 300 ntBASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RPAP1Q9BWH6 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
RPAP1Q9BWH6 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 ACTBP8-201ENST00000403258 1108 ntBASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms