Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
IFT140Q96RY7 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC24.43■■□□□ 1.5
IFT140Q96RY7 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC24.43■■□□□ 1.5
IFT140Q96RY7 IGHV1-12-201ENST00000518307 205 ntBASIC24.43■■□□□ 1.5
IFT140Q96RY7 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC24.43■■□□□ 1.5
IFT140Q96RY7 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC24.43■■□□□ 1.5
IFT140Q96RY7 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
IFT140Q96RY7 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
IFT140Q96RY7 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC24.42■■□□□ 1.5
IFT140Q96RY7 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
IFT140Q96RY7 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC24.42■■□□□ 1.5
IFT140Q96RY7 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC24.42■■□□□ 1.5
IFT140Q96RY7 OR51A9P-201ENST00000422578 911 ntBASIC24.42■■□□□ 1.5
IFT140Q96RY7 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC24.42■■□□□ 1.5
IFT140Q96RY7 AL929302.1-201ENST00000426556 871 ntBASIC24.42■■□□□ 1.5
IFT140Q96RY7 AC023141.7-201ENST00000430646 407 ntBASIC24.42■■□□□ 1.5
IFT140Q96RY7 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC24.42■■□□□ 1.5
IFT140Q96RY7 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 AL451000.1-201ENST00000451300 1186 ntBASIC24.42■■□□□ 1.5
IFT140Q96RY7 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
IFT140Q96RY7 TRMT112P3-201ENST00000580149 358 ntBASIC24.42■■□□□ 1.5
IFT140Q96RY7 AC008972.2-201ENST00000606587 494 ntBASIC24.42■■□□□ 1.5
IFT140Q96RY7 HELLS-212ENST00000630929 400 ntTSL 5 BASIC24.42■■□□□ 1.5
IFT140Q96RY7 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC24.42■■□□□ 1.5
IFT140Q96RY7 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC24.42■■□□□ 1.5
IFT140Q96RY7 AL359258.3-201ENST00000622910 2331 ntBASIC24.42■■□□□ 1.5
IFT140Q96RY7 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
IFT140Q96RY7 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC24.42■■□□□ 1.5
IFT140Q96RY7 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
IFT140Q96RY7 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
IFT140Q96RY7 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
IFT140Q96RY7 TEKT4P2-202ENST00000559466 1312 ntBASIC24.41■■□□□ 1.5
IFT140Q96RY7 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC24.41■■□□□ 1.5
IFT140Q96RY7 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
IFT140Q96RY7 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
IFT140Q96RY7 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC24.41■■□□□ 1.5
IFT140Q96RY7 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC24.41■■□□□ 1.5
IFT140Q96RY7 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
IFT140Q96RY7 AC098934.1-203ENST00000442868 1262 ntBASIC24.41■■□□□ 1.5
IFT140Q96RY7 RNA5SP406-201ENST00000516106 112 ntBASIC24.41■■□□□ 1.5
IFT140Q96RY7 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC24.41■■□□□ 1.5
IFT140Q96RY7 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
IFT140Q96RY7 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC24.41■■□□□ 1.5
IFT140Q96RY7 LINC00244-201ENST00000625073 613 ntBASIC24.41■■□□□ 1.5
IFT140Q96RY7 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
IFT140Q96RY7 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
IFT140Q96RY7 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC24.41■■□□□ 1.5
IFT140Q96RY7 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
IFT140Q96RY7 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
IFT140Q96RY7 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC24.41■■□□□ 1.5
IFT140Q96RY7 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC24.41■■□□□ 1.5
IFT140Q96RY7 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
IFT140Q96RY7 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 AR-207ENST00000612010 3896 ntTSL 5 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 CTSL-202ENST00000342020 933 ntTSL 2 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 RPL3P5-201ENST00000441645 1232 ntBASIC24.4■■□□□ 1.5
IFT140Q96RY7 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 CD164-210ENST00000512821 964 ntTSL 2 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 AC018846.1-201ENST00000568231 183 ntBASIC24.4■■□□□ 1.5
IFT140Q96RY7 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 AL109809.1-201ENST00000418979 1367 ntBASIC24.4■■□□□ 1.5
IFT140Q96RY7 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
IFT140Q96RY7 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC24.4■■□□□ 1.5
IFT140Q96RY7 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms