Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 AC008735.3-201ENST00000596646 500 ntBASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 AC069224.1-201ENST00000566372 1715 ntBASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLIP3Q96DZ5 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 AL121723.1-201ENST00000445194 1519 ntBASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 KRT43P-201ENST00000434019 910 ntBASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 MIR6805-201ENST00000615055 62 ntBASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 MYO15B-237ENST00000642007 4893 ntBASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLIP3Q96DZ5 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 AC097376.2-205ENST00000610159 5334 ntBASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms