Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ECHDC3Q96DC8 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ECHDC3Q96DC8 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 AL596257.1-201ENST00000641463 2694 ntBASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 KRT223P-202ENST00000449164 1292 ntBASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 AL590640.2-201ENST00000457038 527 ntBASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 AC079316.1-201ENST00000548397 411 ntBASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 AC138951.2-201ENST00000623455 1161 ntBASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 AC006453.4-201ENST00000636949 1252 ntBASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
ECHDC3Q96DC8 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 AC004466.1-201ENST00000599515 1080 ntBASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 ECM1P1-201ENST00000604092 1279 ntBASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 AC133552.6-201ENST00000613406 534 ntBASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 ACE3P-201ENST00000423435 1973 ntBASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ECHDC3Q96DC8 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
ECHDC3Q96DC8 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
ECHDC3Q96DC8 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.21■□□□□ 0.02
ECHDC3Q96DC8 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
ECHDC3Q96DC8 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.2■□□□□ 0.02
ECHDC3Q96DC8 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.2■□□□□ 0.02
ECHDC3Q96DC8 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.2■□□□□ 0.02
ECHDC3Q96DC8 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ECHDC3Q96DC8 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.2■□□□□ 0.02
ECHDC3Q96DC8 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
ECHDC3Q96DC8 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ECHDC3Q96DC8 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
ECHDC3Q96DC8 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
ECHDC3Q96DC8 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms