Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 AC113367.3-201ENST00000508316 1912 ntBASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 AL157414.3-201ENST00000624276 1954 ntBASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 CNN2P2-201ENST00000443536 909 ntBASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 CNN2P3-201ENST00000450201 906 ntBASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 SDHAP3-202ENST00000515467 728 ntBASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 AL844908.2-201ENST00000609461 460 ntBASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 AL136317.3-201ENST00000618497 906 ntBASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 AC138969.3-201ENST00000546612 1459 ntBASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 AC138932.2-201ENST00000548268 1459 ntBASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 AC126755.4-201ENST00000549796 1459 ntBASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATG4AQ8WYN0 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 AC027369.6-201ENST00000525520 931 ntBASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATG4AQ8WYN0 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms