Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 AL353705.2-201ENST00000428243 662 ntBASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 HIST3H2BA-201ENST00000436555 524 ntBASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 AC087386.2-201ENST00000623212 4637 ntBASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NUDCD3Q8IVD9 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 REXO1L4P-201ENST00000605109 1937 ntBASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 KRT18P3-201ENST00000451602 1288 ntBASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 TIMM8BP1-201ENST00000452384 211 ntBASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 AC009078.2-202ENST00000463353 338 ntBASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 AC105021.1-202ENST00000570572 669 ntBASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 AC084121.4-201ENST00000641598 221 ntBASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 AF228730.8-201ENST00000642140 221 ntBASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NUDCD3Q8IVD9 ZNF259P1-201ENST00000407656 1365 ntBASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 PTENP1-202ENST00000532280 3996 ntBASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 AC010327.5-201ENST00000586923 3061 ntBASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 BEND3P1-201ENST00000421591 1944 ntBASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms