Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.5■□□□□ 0.23
KRT39Q6A163 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 FGD5P1-202ENST00000614866 2498 ntBASIC16.5■□□□□ 0.23
KRT39Q6A163 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 DGCR5-201ENST00000399539 862 ntBASIC16.5■□□□□ 0.23
KRT39Q6A163 AL162726.2-201ENST00000438986 1017 ntBASIC16.5■□□□□ 0.23
KRT39Q6A163 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.5■□□□□ 0.23
KRT39Q6A163 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
KRT39Q6A163 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
KRT39Q6A163 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.5■□□□□ 0.23
KRT39Q6A163 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.5■□□□□ 0.23
KRT39Q6A163 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.5■□□□□ 0.23
KRT39Q6A163 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.5■□□□□ 0.23
KRT39Q6A163 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
KRT39Q6A163 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.5■□□□□ 0.23
KRT39Q6A163 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.5■□□□□ 0.23
KRT39Q6A163 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
KRT39Q6A163 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
KRT39Q6A163 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
KRT39Q6A163 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
KRT39Q6A163 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
KRT39Q6A163 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
KRT39Q6A163 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 AL139094.1-201ENST00000405549 1188 ntBASIC16.49■□□□□ 0.23
KRT39Q6A163 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.49■□□□□ 0.23
KRT39Q6A163 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
KRT39Q6A163 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.49■□□□□ 0.23
KRT39Q6A163 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.49■□□□□ 0.23
KRT39Q6A163 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
KRT39Q6A163 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.49■□□□□ 0.23
KRT39Q6A163 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
KRT39Q6A163 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
KRT39Q6A163 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.49■□□□□ 0.23
KRT39Q6A163 CU634019.7-201ENST00000624153 1185 ntBASIC16.49■□□□□ 0.23
KRT39Q6A163 AC005252.2-201ENST00000624630 1141 ntBASIC16.49■□□□□ 0.23
KRT39Q6A163 FP236241.2-201ENST00000624906 1185 ntBASIC16.49■□□□□ 0.23
KRT39Q6A163 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.49■□□□□ 0.23
KRT39Q6A163 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.49■□□□□ 0.23
KRT39Q6A163 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC16.49■□□□□ 0.23
KRT39Q6A163 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 AC023824.1-201ENST00000562945 2975 ntBASIC16.49■□□□□ 0.23
KRT39Q6A163 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
KRT39Q6A163 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.49■□□□□ 0.23
KRT39Q6A163 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
KRT39Q6A163 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
KRT39Q6A163 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
KRT39Q6A163 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
KRT39Q6A163 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
KRT39Q6A163 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.48■□□□□ 0.23
KRT39Q6A163 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
KRT39Q6A163 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
KRT39Q6A163 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
KRT39Q6A163 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
KRT39Q6A163 PCDHA3-202ENST00000532566 4594 ntBASIC16.48■□□□□ 0.23
KRT39Q6A163 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms