Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 AP002414.2-201ENST00000591780 3365 ntBASIC18.47■□□□□ 0.55
VPS53Q5VIR6 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 C1QBPP1-201ENST00000400117 770 ntBASIC18.46■□□□□ 0.55
VPS53Q5VIR6 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 KRT8P22-201ENST00000562317 1415 ntBASIC18.46■□□□□ 0.55
VPS53Q5VIR6 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS53Q5VIR6 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
VPS53Q5VIR6 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 LINC02228-204ENST00000642115 2962 ntBASIC18.45■□□□□ 0.54
VPS53Q5VIR6 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 AL138799.1-201ENST00000448213 1675 ntBASIC18.45■□□□□ 0.54
VPS53Q5VIR6 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 COX5BP8-201ENST00000416911 349 ntBASIC18.45■□□□□ 0.54
VPS53Q5VIR6 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 AC005252.2-201ENST00000624630 1141 ntBASIC18.45■□□□□ 0.54
VPS53Q5VIR6 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS53Q5VIR6 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 AC013726.1-201ENST00000563747 2285 ntBASIC18.44■□□□□ 0.54
VPS53Q5VIR6 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 WASH3P-207ENST00000560956 1394 ntBASIC18.44■□□□□ 0.54
VPS53Q5VIR6 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms