Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC20.77■□□□□ 0.91
MSH6P52701 IL9RP3-201ENST00000442856 1674 ntBASIC20.77■□□□□ 0.91
MSH6P52701 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC20.77■□□□□ 0.91
MSH6P52701 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
MSH6P52701 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 AC124067.4-201ENST00000519691 2379 ntBASIC20.76■□□□□ 0.91
MSH6P52701 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC20.76■□□□□ 0.91
MSH6P52701 FTH1P22-201ENST00000456305 520 ntBASIC20.76■□□□□ 0.91
MSH6P52701 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
MSH6P52701 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
MSH6P52701 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
MSH6P52701 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC20.76■□□□□ 0.91
MSH6P52701 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
MSH6P52701 MIR3180-2-201ENST00000581748 88 ntBASIC20.76■□□□□ 0.91
MSH6P52701 MIR4472-1-201ENST00000584349 80 ntBASIC20.76■□□□□ 0.91
MSH6P52701 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC20.76■□□□□ 0.91
MSH6P52701 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC20.76■□□□□ 0.91
MSH6P52701 AC018695.6-201ENST00000614011 534 ntBASIC20.76■□□□□ 0.91
MSH6P52701 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.76■□□□□ 0.91
MSH6P52701 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC20.76■□□□□ 0.91
MSH6P52701 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC20.76■□□□□ 0.91
MSH6P52701 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
MSH6P52701 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC20.76■□□□□ 0.91
MSH6P52701 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC20.76■□□□□ 0.91
MSH6P52701 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSH6P52701 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC20.76■□□□□ 0.91
MSH6P52701 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH6P52701 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC20.75■□□□□ 0.91
MSH6P52701 SKA2-202ENST00000437036 625 ntTSL 2 BASIC20.75■□□□□ 0.91
MSH6P52701 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC20.75■□□□□ 0.91
MSH6P52701 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
MSH6P52701 FAM86KP-201ENST00000509817 987 ntBASIC20.75■□□□□ 0.91
MSH6P52701 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
MSH6P52701 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
MSH6P52701 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH6P52701 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC20.75■□□□□ 0.91
MSH6P52701 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH6P52701 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC20.75■□□□□ 0.91
MSH6P52701 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH6P52701 KRT8P31-201ENST00000504812 1408 ntBASIC20.75■□□□□ 0.91
MSH6P52701 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH6P52701 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH6P52701 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH6P52701 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH6P52701 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH6P52701 MTHFR-217ENST00000641820 1569 ntBASIC20.75■□□□□ 0.91
MSH6P52701 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
MSH6P52701 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH6P52701 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC20.75■□□□□ 0.91
MSH6P52701 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.75■□□□□ 0.91
MSH6P52701 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH6P52701 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
MSH6P52701 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
MSH6P52701 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC20.74■□□□□ 0.91
MSH6P52701 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC20.74■□□□□ 0.91
MSH6P52701 TSPY25P-201ENST00000429463 745 ntBASIC20.74■□□□□ 0.91
MSH6P52701 AL354861.1-201ENST00000445213 355 ntBASIC20.74■□□□□ 0.91
MSH6P52701 RPSAP15-201ENST00000448168 861 ntBASIC20.74■□□□□ 0.91
MSH6P52701 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC20.74■□□□□ 0.91
MSH6P52701 AC084752.1-201ENST00000509766 622 ntBASIC20.74■□□□□ 0.91
MSH6P52701 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC20.74■□□□□ 0.91
MSH6P52701 RN7SL470P-201ENST00000583069 259 ntBASIC20.74■□□□□ 0.91
MSH6P52701 MIR3188-201ENST00000583494 85 ntBASIC20.74■□□□□ 0.91
MSH6P52701 AP001184.1-201ENST00000637936 376 ntBASIC20.74■□□□□ 0.91
MSH6P52701 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC20.74■□□□□ 0.91
MSH6P52701 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.74■□□□□ 0.91
MSH6P52701 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC20.74■□□□□ 0.91
MSH6P52701 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH6P52701 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC20.73■□□□□ 0.91
MSH6P52701 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
MSH6P52701 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC20.73■□□□□ 0.91
MSH6P52701 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH6P52701 BANF1P3-201ENST00000412556 261 ntBASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms