Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SOX3P41225 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SOX3P41225 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SOX3P41225 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SOX3P41225 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SOX3P41225 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SOX3P41225 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SOX3P41225 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SOX3P41225 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SOX3P41225 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
SOX3P41225 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.46□□□□□ -0.09
SOX3P41225 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.46□□□□□ -0.09
SOX3P41225 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.46□□□□□ -0.09
SOX3P41225 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.46□□□□□ -0.09
SOX3P41225 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.46□□□□□ -0.09
SOX3P41225 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.46□□□□□ -0.09
SOX3P41225 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.46□□□□□ -0.09
SOX3P41225 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
SOX3P41225 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
SOX3P41225 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 AC098614.1-201ENST00000368528 745 ntBASIC14.46□□□□□ -0.09
SOX3P41225 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 NME2P1-201ENST00000426182 414 ntBASIC14.46□□□□□ -0.09
SOX3P41225 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.46□□□□□ -0.09
SOX3P41225 GAPDHP21-201ENST00000450301 1010 ntBASIC14.46□□□□□ -0.09
SOX3P41225 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.46□□□□□ -0.09
SOX3P41225 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 AC239800.4-201ENST00000603712 296 ntBASIC14.46□□□□□ -0.09
SOX3P41225 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
SOX3P41225 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.46□□□□□ -0.09
SOX3P41225 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.46□□□□□ -0.09
SOX3P41225 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SOX3P41225 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.46□□□□□ -0.09
SOX3P41225 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
SOX3P41225 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.46□□□□□ -0.1
SOX3P41225 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SOX3P41225 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SOX3P41225 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.46□□□□□ -0.1
SOX3P41225 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
SOX3P41225 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.46□□□□□ -0.1
SOX3P41225 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
SOX3P41225 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SOX3P41225 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SOX3P41225 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
SOX3P41225 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.45□□□□□ -0.1
SOX3P41225 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.45□□□□□ -0.1
SOX3P41225 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
SOX3P41225 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
SOX3P41225 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.45□□□□□ -0.1
SOX3P41225 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
SOX3P41225 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
SOX3P41225 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
SOX3P41225 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.45□□□□□ -0.1
SOX3P41225 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SOX3P41225 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 AC063926.2-201ENST00000623766 1308 ntBASIC14.44□□□□□ -0.1
SOX3P41225 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.44□□□□□ -0.1
SOX3P41225 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SOX3P41225 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SOX3P41225 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms