Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.52■□□□□ 0.08
RPA3P35244 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.52■□□□□ 0.08
RPA3P35244 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.08
RPA3P35244 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.52■□□□□ 0.08
RPA3P35244 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
RPA3P35244 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
RPA3P35244 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.52■□□□□ 0.08
RPA3P35244 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.52■□□□□ 0.08
RPA3P35244 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.52■□□□□ 0.08
RPA3P35244 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.52■□□□□ 0.08
RPA3P35244 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.52■□□□□ 0.08
RPA3P35244 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.52■□□□□ 0.08
RPA3P35244 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.52■□□□□ 0.08
RPA3P35244 AC051619.7-201ENST00000568314 623 ntBASIC15.52■□□□□ 0.08
RPA3P35244 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.52■□□□□ 0.08
RPA3P35244 AC011467.4-201ENST00000594891 528 ntBASIC15.52■□□□□ 0.08
RPA3P35244 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RPA3P35244 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
RPA3P35244 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
RPA3P35244 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
RPA3P35244 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.52■□□□□ 0.07
RPA3P35244 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RPA3P35244 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
RPA3P35244 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.52■□□□□ 0.07
RPA3P35244 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.52■□□□□ 0.07
RPA3P35244 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.52■□□□□ 0.07
RPA3P35244 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
RPA3P35244 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
RPA3P35244 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
RPA3P35244 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.52■□□□□ 0.07
RPA3P35244 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
RPA3P35244 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RPA3P35244 AC010327.5-201ENST00000586923 3061 ntBASIC15.51■□□□□ 0.07
RPA3P35244 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.51■□□□□ 0.07
RPA3P35244 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.51■□□□□ 0.07
RPA3P35244 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
RPA3P35244 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.51■□□□□ 0.07
RPA3P35244 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.51■□□□□ 0.07
RPA3P35244 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.51■□□□□ 0.07
RPA3P35244 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.51■□□□□ 0.07
RPA3P35244 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.51■□□□□ 0.07
RPA3P35244 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.51■□□□□ 0.07
RPA3P35244 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.51■□□□□ 0.07
RPA3P35244 AC140878.1-201ENST00000565277 250 ntBASIC15.51■□□□□ 0.07
RPA3P35244 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.51■□□□□ 0.07
RPA3P35244 AL133215.2-201ENST00000609242 977 ntBASIC15.51■□□□□ 0.07
RPA3P35244 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.51■□□□□ 0.07
RPA3P35244 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
RPA3P35244 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RPA3P35244 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.51■□□□□ 0.07
RPA3P35244 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.51■□□□□ 0.07
RPA3P35244 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
RPA3P35244 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.51■□□□□ 0.07
RPA3P35244 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.51■□□□□ 0.07
RPA3P35244 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RPA3P35244 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.5■□□□□ 0.07
RPA3P35244 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
RPA3P35244 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
RPA3P35244 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.5■□□□□ 0.07
RPA3P35244 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms