Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC11.92□□□□□ -0.5
CXCL1P09341 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
CXCL1P09341 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC11.92□□□□□ -0.5
CXCL1P09341 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 AC004945.1-201ENST00000416738 983 ntBASIC11.92□□□□□ -0.5
CXCL1P09341 ISCU-203ENST00000431221 799 ntTSL 2 BASIC11.92□□□□□ -0.5
CXCL1P09341 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC11.92□□□□□ -0.5
CXCL1P09341 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC11.92□□□□□ -0.5
CXCL1P09341 SART3-203ENST00000546611 1184 ntBASIC11.92□□□□□ -0.5
CXCL1P09341 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
CXCL1P09341 RIN3-211ENST00000557762 517 ntTSL 3 BASIC11.92□□□□□ -0.5
CXCL1P09341 ETFA-208ENST00000559602 792 ntTSL 3 BASIC11.92□□□□□ -0.5
CXCL1P09341 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC11.92□□□□□ -0.5
CXCL1P09341 MIR4515-201ENST00000584082 81 ntBASIC11.92□□□□□ -0.5
CXCL1P09341 AC008667.4-201ENST00000607370 168 ntBASIC11.92□□□□□ -0.5
CXCL1P09341 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC11.92□□□□□ -0.5
CXCL1P09341 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC11.92□□□□□ -0.5
CXCL1P09341 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC11.92□□□□□ -0.5
CXCL1P09341 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC11.92□□□□□ -0.5
CXCL1P09341 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC11.92□□□□□ -0.5
CXCL1P09341 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC11.92□□□□□ -0.5
CXCL1P09341 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
CXCL1P09341 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC11.92□□□□□ -0.5
CXCL1P09341 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CXCL1P09341 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 AC018442.1-201ENST00000421439 2061 ntBASIC11.91□□□□□ -0.5
CXCL1P09341 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC11.91□□□□□ -0.5
CXCL1P09341 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
CXCL1P09341 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC11.91□□□□□ -0.5
CXCL1P09341 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
CXCL1P09341 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
CXCL1P09341 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC11.91□□□□□ -0.5
CXCL1P09341 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC11.91□□□□□ -0.5
CXCL1P09341 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC11.91□□□□□ -0.5
CXCL1P09341 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC11.91□□□□□ -0.5
CXCL1P09341 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC11.91□□□□□ -0.5
CXCL1P09341 KRT18P27-201ENST00000427733 1299 ntBASIC11.91□□□□□ -0.5
CXCL1P09341 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
CXCL1P09341 AC093724.1-201ENST00000448659 1027 ntBASIC11.91□□□□□ -0.5
CXCL1P09341 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC11.91□□□□□ -0.5
CXCL1P09341 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
CXCL1P09341 CIPC-205ENST00000555437 566 ntTSL 3 BASIC11.91□□□□□ -0.5
CXCL1P09341 MIR4313-201ENST00000580760 101 ntBASIC11.91□□□□□ -0.5
CXCL1P09341 AC008608.2-201ENST00000606089 416 ntBASIC11.91□□□□□ -0.5
CXCL1P09341 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC11.91□□□□□ -0.5
CXCL1P09341 AC107918.4-202ENST00000641623 219 ntBASIC11.91□□□□□ -0.5
CXCL1P09341 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
CXCL1P09341 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
CXCL1P09341 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC11.91□□□□□ -0.5
CXCL1P09341 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
CXCL1P09341 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC11.91□□□□□ -0.5
CXCL1P09341 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
CXCL1P09341 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC11.91□□□□□ -0.5
CXCL1P09341 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC11.91□□□□□ -0.5
CXCL1P09341 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
CXCL1P09341 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CXCL1P09341 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
CXCL1P09341 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC11.9□□□□□ -0.5
CXCL1P09341 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
CXCL1P09341 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC11.9□□□□□ -0.5
CXCL1P09341 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
CXCL1P09341 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC11.9□□□□□ -0.5
CXCL1P09341 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC11.9□□□□□ -0.5
CXCL1P09341 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC11.9□□□□□ -0.5
CXCL1P09341 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
CXCL1P09341 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC11.9□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms