Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.4□□□□□ -0.1
LDB3O75112 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.4□□□□□ -0.1
LDB3O75112 AL591163.1-201ENST00000641757 987 ntBASIC14.4□□□□□ -0.1
LDB3O75112 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LDB3O75112 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LDB3O75112 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.4□□□□□ -0.1
LDB3O75112 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.4□□□□□ -0.1
LDB3O75112 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LDB3O75112 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LDB3O75112 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
LDB3O75112 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
LDB3O75112 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LDB3O75112 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.4□□□□□ -0.1
LDB3O75112 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
LDB3O75112 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
LDB3O75112 REXO1L5P-201ENST00000622260 2098 ntBASIC14.4□□□□□ -0.1
LDB3O75112 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.4□□□□□ -0.1
LDB3O75112 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LDB3O75112 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.4□□□□□ -0.1
LDB3O75112 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
LDB3O75112 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.39□□□□□ -0.11
LDB3O75112 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
LDB3O75112 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.39□□□□□ -0.11
LDB3O75112 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.39□□□□□ -0.11
LDB3O75112 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.39□□□□□ -0.11
LDB3O75112 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.39□□□□□ -0.11
LDB3O75112 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
LDB3O75112 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
LDB3O75112 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 LINC00528-201ENST00000600723 2160 ntBASIC14.39□□□□□ -0.11
LDB3O75112 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.39□□□□□ -0.11
LDB3O75112 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.39□□□□□ -0.11
LDB3O75112 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.39□□□□□ -0.11
LDB3O75112 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.39□□□□□ -0.11
LDB3O75112 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.39□□□□□ -0.11
LDB3O75112 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.39□□□□□ -0.11
LDB3O75112 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.39□□□□□ -0.11
LDB3O75112 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.39□□□□□ -0.11
LDB3O75112 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.39□□□□□ -0.11
LDB3O75112 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
LDB3O75112 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
LDB3O75112 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.39□□□□□ -0.11
LDB3O75112 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.39□□□□□ -0.11
LDB3O75112 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.39□□□□□ -0.11
LDB3O75112 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
LDB3O75112 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.39□□□□□ -0.11
LDB3O75112 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
LDB3O75112 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LDB3O75112 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.39□□□□□ -0.11
LDB3O75112 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 MSTO2P-201ENST00000314835 1709 ntBASIC14.38□□□□□ -0.11
LDB3O75112 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 RNU1-114P-201ENST00000365297 166 ntBASIC14.38□□□□□ -0.11
LDB3O75112 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms