Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.32■□□□□ 0.04
SHOX2O60902 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHOX2O60902 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SHOX2O60902 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SHOX2O60902 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 AKR1C7P-201ENST00000305623 895 ntBASIC15.31■□□□□ 0.04
SHOX2O60902 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 AC092474.2-201ENST00000424288 719 ntBASIC15.31■□□□□ 0.04
SHOX2O60902 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC15.31■□□□□ 0.04
SHOX2O60902 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SHOX2O60902 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.31■□□□□ 0.04
SHOX2O60902 SKP2-204ENST00000508514 821 ntTSL 3 BASIC15.31■□□□□ 0.04
SHOX2O60902 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 AC091304.2-201ENST00000564639 760 ntBASIC15.31■□□□□ 0.04
SHOX2O60902 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 LILRP1-201ENST00000444199 1370 ntBASIC15.31■□□□□ 0.04
SHOX2O60902 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 AC073869.1-201ENST00000415574 2762 ntBASIC15.31■□□□□ 0.04
SHOX2O60902 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
SHOX2O60902 CYP4F24P-201ENST00000586049 1580 ntBASIC15.31■□□□□ 0.04
SHOX2O60902 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SHOX2O60902 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SHOX2O60902 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 ST20-AS1-201ENST00000560255 4223 ntBASIC15.31■□□□□ 0.04
SHOX2O60902 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHOX2O60902 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC15.31■□□□□ 0.04
SHOX2O60902 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC15.3■□□□□ 0.04
SHOX2O60902 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.3■□□□□ 0.04
SHOX2O60902 AC073621.1-201ENST00000392730 636 ntBASIC15.3■□□□□ 0.04
SHOX2O60902 TSPY19P-201ENST00000418461 509 ntBASIC15.3■□□□□ 0.04
SHOX2O60902 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15.3■□□□□ 0.04
SHOX2O60902 TSPY18P-201ENST00000441642 509 ntBASIC15.3■□□□□ 0.04
SHOX2O60902 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
SHOX2O60902 AF238378.1-201ENST00000526806 358 ntBASIC15.3■□□□□ 0.04
SHOX2O60902 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
SHOX2O60902 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.3■□□□□ 0.04
SHOX2O60902 REXO1L6P-202ENST00000619970 1078 ntBASIC15.3■□□□□ 0.04
SHOX2O60902 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.3■□□□□ 0.04
SHOX2O60902 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SHOX2O60902 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC15.3■□□□□ 0.04
SHOX2O60902 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
SHOX2O60902 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC15.3■□□□□ 0.04
SHOX2O60902 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
SHOX2O60902 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SHOX2O60902 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SHOX2O60902 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHOX2O60902 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms