Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VTA1Q9NP79 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VTA1Q9NP79 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VTA1Q9NP79 ELK2AP-201ENST00000392510 1007 ntBASIC16.96■□□□□ 0.31
VTA1Q9NP79 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VTA1Q9NP79 PARP8-218ENST00000513738 596 ntTSL 4 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 AC079328.1-201ENST00000560358 952 ntBASIC16.96■□□□□ 0.31
VTA1Q9NP79 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 MIR4783-201ENST00000580343 82 ntBASIC16.96■□□□□ 0.31
VTA1Q9NP79 RN7SL163P-201ENST00000583100 276 ntBASIC16.96■□□□□ 0.31
VTA1Q9NP79 AC009955.4-201ENST00000597192 544 ntBASIC16.96■□□□□ 0.31
VTA1Q9NP79 AC091544.8-201ENST00000619490 361 ntBASIC16.96■□□□□ 0.31
VTA1Q9NP79 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VTA1Q9NP79 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VTA1Q9NP79 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VTA1Q9NP79 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.96■□□□□ 0.31
VTA1Q9NP79 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VTA1Q9NP79 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
VTA1Q9NP79 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VTA1Q9NP79 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
VTA1Q9NP79 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VTA1Q9NP79 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VTA1Q9NP79 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.95■□□□□ 0.3
VTA1Q9NP79 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.95■□□□□ 0.3
VTA1Q9NP79 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VTA1Q9NP79 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.95■□□□□ 0.3
VTA1Q9NP79 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 AC010141.1-201ENST00000411585 623 ntBASIC16.95■□□□□ 0.3
VTA1Q9NP79 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.95■□□□□ 0.3
VTA1Q9NP79 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.95■□□□□ 0.3
VTA1Q9NP79 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC16.95■□□□□ 0.3
VTA1Q9NP79 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 AC245884.6-201ENST00000515672 1067 ntBASIC16.95■□□□□ 0.3
VTA1Q9NP79 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
VTA1Q9NP79 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 AC100827.2-201ENST00000563214 1194 ntBASIC16.95■□□□□ 0.3
VTA1Q9NP79 RN7SL774P-201ENST00000577467 290 ntBASIC16.95■□□□□ 0.3
VTA1Q9NP79 AC005324.6-201ENST00000587972 613 ntBASIC16.95■□□□□ 0.3
VTA1Q9NP79 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.95■□□□□ 0.3
VTA1Q9NP79 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.95■□□□□ 0.3
VTA1Q9NP79 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.95■□□□□ 0.3
VTA1Q9NP79 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 SHC1P1-201ENST00000425230 1745 ntBASIC16.95■□□□□ 0.3
VTA1Q9NP79 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.95■□□□□ 0.3
VTA1Q9NP79 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 AC011840.2-201ENST00000563063 1520 ntBASIC16.95■□□□□ 0.3
VTA1Q9NP79 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VTA1Q9NP79 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC16.94■□□□□ 0.3
VTA1Q9NP79 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VTA1Q9NP79 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VTA1Q9NP79 KRT8P19-201ENST00000551916 1455 ntBASIC16.94■□□□□ 0.3
VTA1Q9NP79 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VTA1Q9NP79 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VTA1Q9NP79 AC004899.1-201ENST00000424687 1714 ntBASIC16.94■□□□□ 0.3
VTA1Q9NP79 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VTA1Q9NP79 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VTA1Q9NP79 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VTA1Q9NP79 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
VTA1Q9NP79 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.94■□□□□ 0.3
VTA1Q9NP79 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.94■□□□□ 0.3
VTA1Q9NP79 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VTA1Q9NP79 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.94■□□□□ 0.3
VTA1Q9NP79 AL133466.1-201ENST00000447582 150 ntBASIC16.94■□□□□ 0.3
VTA1Q9NP79 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC16.94■□□□□ 0.3
VTA1Q9NP79 HNRNPA1P36-201ENST00000521313 955 ntBASIC16.94■□□□□ 0.3
VTA1Q9NP79 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.94■□□□□ 0.3
VTA1Q9NP79 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VTA1Q9NP79 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC16.94■□□□□ 0.3
VTA1Q9NP79 RN7SL190P-201ENST00000582519 257 ntBASIC16.94■□□□□ 0.3
VTA1Q9NP79 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.94■□□□□ 0.3
VTA1Q9NP79 AC026740.1-201ENST00000607068 791 ntBASIC16.94■□□□□ 0.3
VTA1Q9NP79 AC097724.1-201ENST00000609581 426 ntBASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms