Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 Z69890.1-201ENST00000382990 339 ntBASIC14.74□□□□□ -0.05
VPS13AQ96RL7 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 BANF1P3-201ENST00000412556 261 ntBASIC14.74□□□□□ -0.05
VPS13AQ96RL7 RN7SL494P-201ENST00000461517 304 ntBASIC14.74□□□□□ -0.05
VPS13AQ96RL7 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 ELP5-212ENST00000574255 671 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 FTH1P22-201ENST00000456305 520 ntBASIC14.73□□□□□ -0.05
VPS13AQ96RL7 PGAM1P12-201ENST00000505622 748 ntBASIC14.73□□□□□ -0.05
VPS13AQ96RL7 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 SIGLEC18P-201ENST00000602271 909 ntBASIC14.73□□□□□ -0.05
VPS13AQ96RL7 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 AC084018.2-201ENST00000613093 2607 ntBASIC14.73□□□□□ -0.05
VPS13AQ96RL7 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 AL645933.1-201ENST00000440087 609 ntBASIC14.73□□□□□ -0.05
VPS13AQ96RL7 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 AC140113.1-201ENST00000603467 169 ntBASIC14.73□□□□□ -0.05
VPS13AQ96RL7 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 PAUPAR-201ENST00000630360 2965 ntBASIC14.73□□□□□ -0.05
VPS13AQ96RL7 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 AL807761.2-201ENST00000422849 729 ntBASIC14.73□□□□□ -0.05
VPS13AQ96RL7 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC14.73□□□□□ -0.05
VPS13AQ96RL7 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 DUTP3-201ENST00000450025 415 ntBASIC14.72□□□□□ -0.05
VPS13AQ96RL7 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 AC004066.1-201ENST00000502488 802 ntBASIC14.72□□□□□ -0.05
VPS13AQ96RL7 CHCHD2P2-201ENST00000503744 321 ntBASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms