Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.79□□□□□ -0.2
CPNE4Q96A23 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 TTTY23B-201ENST00000442790 549 ntBASIC13.79□□□□□ -0.2
CPNE4Q96A23 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 SAMD11P1-201ENST00000571429 661 ntBASIC13.79□□□□□ -0.2
CPNE4Q96A23 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 AC104640.1-201ENST00000562617 2109 ntBASIC13.79□□□□□ -0.2
CPNE4Q96A23 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 AC136621.1-201ENST00000624017 2304 ntBASIC13.79□□□□□ -0.2
CPNE4Q96A23 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.79□□□□□ -0.2
CPNE4Q96A23 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CPNE4Q96A23 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 ACKR1-201ENST00000368121 1240 ntBASIC13.78□□□□□ -0.2
CPNE4Q96A23 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 GHSR-202ENST00000427970 912 ntBASIC13.78□□□□□ -0.2
CPNE4Q96A23 ACTG1P3-201ENST00000431775 1114 ntBASIC13.78□□□□□ -0.2
CPNE4Q96A23 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 GIMAP3P-201ENST00000495150 836 ntBASIC13.78□□□□□ -0.2
CPNE4Q96A23 AP001582.1-201ENST00000525856 295 ntBASIC13.78□□□□□ -0.2
CPNE4Q96A23 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 PTP4A1P2-201ENST00000546033 454 ntBASIC13.78□□□□□ -0.2
CPNE4Q96A23 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 AC097376.2-205ENST00000610159 5334 ntBASIC13.78□□□□□ -0.2
CPNE4Q96A23 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.78□□□□□ -0.2
CPNE4Q96A23 API5-202ENST00000420461 2009 ntTSL 2 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms