Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 AL109954.1-202ENST00000564051 2148 ntBASIC13.62□□□□□ -0.23
SKA3Q8IX90 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 AC036164.1-201ENST00000570544 333 ntBASIC13.62□□□□□ -0.23
SKA3Q8IX90 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 KRT8P44-201ENST00000441609 1350 ntBASIC13.61□□□□□ -0.23
SKA3Q8IX90 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 DFFBP1-201ENST00000433250 979 ntBASIC13.61□□□□□ -0.23
SKA3Q8IX90 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 FAM86LP-201ENST00000478302 853 ntBASIC13.61□□□□□ -0.23
SKA3Q8IX90 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 AL132655.2-201ENST00000596276 594 ntBASIC13.61□□□□□ -0.23
SKA3Q8IX90 AC092364.2-202ENST00000597012 1073 ntBASIC13.61□□□□□ -0.23
SKA3Q8IX90 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC13.61□□□□□ -0.23
SKA3Q8IX90 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SKA3Q8IX90 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms