Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.53■□□□□ 0.24
KRT39Q6A163 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.53■□□□□ 0.24
KRT39Q6A163 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.53■□□□□ 0.24
KRT39Q6A163 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.53■□□□□ 0.24
KRT39Q6A163 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.53■□□□□ 0.24
KRT39Q6A163 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.53■□□□□ 0.24
KRT39Q6A163 AP001582.1-201ENST00000525856 295 ntBASIC16.53■□□□□ 0.24
KRT39Q6A163 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.53■□□□□ 0.24
KRT39Q6A163 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.53■□□□□ 0.24
KRT39Q6A163 PRSS30P-206ENST00000641773 873 ntBASIC16.53■□□□□ 0.24
KRT39Q6A163 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
KRT39Q6A163 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.53■□□□□ 0.24
KRT39Q6A163 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
KRT39Q6A163 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.53■□□□□ 0.24
KRT39Q6A163 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
KRT39Q6A163 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
KRT39Q6A163 LILRP1-201ENST00000444199 1370 ntBASIC16.52■□□□□ 0.24
KRT39Q6A163 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
KRT39Q6A163 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
KRT39Q6A163 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.52■□□□□ 0.24
KRT39Q6A163 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
KRT39Q6A163 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.52■□□□□ 0.24
KRT39Q6A163 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
KRT39Q6A163 AC013726.1-201ENST00000563747 2285 ntBASIC16.52■□□□□ 0.24
KRT39Q6A163 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
KRT39Q6A163 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
KRT39Q6A163 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.52■□□□□ 0.24
KRT39Q6A163 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.52■□□□□ 0.24
KRT39Q6A163 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
KRT39Q6A163 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
KRT39Q6A163 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
KRT39Q6A163 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
KRT39Q6A163 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
KRT39Q6A163 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
KRT39Q6A163 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.52■□□□□ 0.24
KRT39Q6A163 ENPP7P5-201ENST00000541031 1031 ntBASIC16.52■□□□□ 0.24
KRT39Q6A163 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.52■□□□□ 0.24
KRT39Q6A163 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.52■□□□□ 0.24
KRT39Q6A163 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.52■□□□□ 0.24
KRT39Q6A163 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.52■□□□□ 0.24
KRT39Q6A163 WFDC1-204ENST00000613603 549 ntBASIC16.52■□□□□ 0.24
KRT39Q6A163 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.52■□□□□ 0.24
KRT39Q6A163 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.52■□□□□ 0.23
KRT39Q6A163 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC16.52■□□□□ 0.23
KRT39Q6A163 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.52■□□□□ 0.23
KRT39Q6A163 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
KRT39Q6A163 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
KRT39Q6A163 LINC01101-201ENST00000622953 1884 ntBASIC16.52■□□□□ 0.23
KRT39Q6A163 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
KRT39Q6A163 REXO1L5P-201ENST00000622260 2098 ntBASIC16.52■□□□□ 0.23
KRT39Q6A163 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.52■□□□□ 0.23
KRT39Q6A163 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
KRT39Q6A163 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.52■□□□□ 0.23
KRT39Q6A163 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.51■□□□□ 0.23
KRT39Q6A163 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.51■□□□□ 0.23
KRT39Q6A163 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
KRT39Q6A163 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
KRT39Q6A163 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC16.51■□□□□ 0.23
KRT39Q6A163 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
KRT39Q6A163 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
KRT39Q6A163 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
KRT39Q6A163 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.51■□□□□ 0.23
KRT39Q6A163 HLA-K-203ENST00000430151 1046 ntBASIC16.51■□□□□ 0.23
KRT39Q6A163 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.51■□□□□ 0.23
KRT39Q6A163 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.51■□□□□ 0.23
KRT39Q6A163 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.51■□□□□ 0.23
KRT39Q6A163 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.51■□□□□ 0.23
KRT39Q6A163 AC138761.1-201ENST00000584393 385 ntBASIC16.51■□□□□ 0.23
KRT39Q6A163 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.51■□□□□ 0.23
KRT39Q6A163 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC16.51■□□□□ 0.23
KRT39Q6A163 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
KRT39Q6A163 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms