Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SRP54P61011 LINC02228-204ENST00000642115 2962 ntBASIC15.15■□□□□ 0.02
SRP54P61011 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.15■□□□□ 0.02
SRP54P61011 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SRP54P61011 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.14■□□□□ 0.01
SRP54P61011 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.14■□□□□ 0.01
SRP54P61011 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.14■□□□□ 0.01
SRP54P61011 REXO1L6P-201ENST00000603433 1515 ntBASIC15.14■□□□□ 0.01
SRP54P61011 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 AP005117.1-202ENST00000581724 1908 ntBASIC15.14■□□□□ 0.01
SRP54P61011 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SRP54P61011 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SRP54P61011 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SRP54P61011 RNU1-114P-201ENST00000365297 166 ntBASIC15.14■□□□□ 0.01
SRP54P61011 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.14■□□□□ 0.01
SRP54P61011 KLF2P2-201ENST00000416807 1039 ntBASIC15.14■□□□□ 0.01
SRP54P61011 FAM21FP-201ENST00000426241 1131 ntBASIC15.14■□□□□ 0.01
SRP54P61011 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.14■□□□□ 0.01
SRP54P61011 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.14■□□□□ 0.01
SRP54P61011 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.14■□□□□ 0.01
SRP54P61011 AL583810.1-201ENST00000553344 1045 ntBASIC15.14■□□□□ 0.01
SRP54P61011 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.14■□□□□ 0.01
SRP54P61011 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SRP54P61011 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SRP54P61011 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SRP54P61011 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.14■□□□□ 0.01
SRP54P61011 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
SRP54P61011 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SRP54P61011 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.14■□□□□ 0.01
SRP54P61011 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.13■□□□□ 0.01
SRP54P61011 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.13■□□□□ 0.01
SRP54P61011 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.13■□□□□ 0.01
SRP54P61011 CNN2P8-201ENST00000421872 913 ntBASIC15.13■□□□□ 0.01
SRP54P61011 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.13■□□□□ 0.01
SRP54P61011 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 AC092658.1-201ENST00000505836 891 ntBASIC15.13■□□□□ 0.01
SRP54P61011 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.13■□□□□ 0.01
SRP54P61011 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 RNA5SP412-201ENST00000516234 123 ntBASIC15.13■□□□□ 0.01
SRP54P61011 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.13■□□□□ 0.01
SRP54P61011 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.13■□□□□ 0.01
SRP54P61011 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.13■□□□□ 0.01
SRP54P61011 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SRP54P61011 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms