Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CDH12P55289 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.34□□□□□ -0.11
CDH12P55289 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.34□□□□□ -0.11
CDH12P55289 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.34□□□□□ -0.11
CDH12P55289 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.34□□□□□ -0.11
CDH12P55289 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.34□□□□□ -0.11
CDH12P55289 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.34□□□□□ -0.11
CDH12P55289 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.34□□□□□ -0.11
CDH12P55289 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.34□□□□□ -0.11
CDH12P55289 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.34□□□□□ -0.11
CDH12P55289 AC092865.5-201ENST00000545435 363 ntBASIC14.34□□□□□ -0.11
CDH12P55289 AL079307.3-201ENST00000556114 283 ntBASIC14.34□□□□□ -0.11
CDH12P55289 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
CDH12P55289 AC011467.4-201ENST00000594891 528 ntBASIC14.34□□□□□ -0.11
CDH12P55289 AP001059.3-201ENST00000619053 235 ntBASIC14.34□□□□□ -0.11
CDH12P55289 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CDH12P55289 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CDH12P55289 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CDH12P55289 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.34□□□□□ -0.11
CDH12P55289 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.34□□□□□ -0.11
CDH12P55289 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.34□□□□□ -0.11
CDH12P55289 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.34□□□□□ -0.11
CDH12P55289 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CDH12P55289 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CDH12P55289 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.33□□□□□ -0.11
CDH12P55289 MTHFR-210ENST00000641407 2387 ntBASIC14.33□□□□□ -0.11
CDH12P55289 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CDH12P55289 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CDH12P55289 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.33□□□□□ -0.11
CDH12P55289 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.33□□□□□ -0.11
CDH12P55289 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
CDH12P55289 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CDH12P55289 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CDH12P55289 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 AC254562.1-201ENST00000417586 456 ntBASIC14.33□□□□□ -0.12
CDH12P55289 SPDYE7P-202ENST00000420373 878 ntBASIC14.33□□□□□ -0.12
CDH12P55289 GHSR-202ENST00000427970 912 ntBASIC14.33□□□□□ -0.12
CDH12P55289 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.33□□□□□ -0.12
CDH12P55289 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.33□□□□□ -0.12
CDH12P55289 TARDBPP1-201ENST00000442013 1203 ntBASIC14.33□□□□□ -0.12
CDH12P55289 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.33□□□□□ -0.12
CDH12P55289 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.33□□□□□ -0.12
CDH12P55289 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.33□□□□□ -0.12
CDH12P55289 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.33□□□□□ -0.12
CDH12P55289 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.33□□□□□ -0.12
CDH12P55289 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.33□□□□□ -0.12
CDH12P55289 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.33□□□□□ -0.12
CDH12P55289 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.33□□□□□ -0.12
CDH12P55289 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.33□□□□□ -0.12
CDH12P55289 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.33□□□□□ -0.12
CDH12P55289 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CDH12P55289 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CDH12P55289 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.33□□□□□ -0.12
CDH12P55289 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.33□□□□□ -0.12
CDH12P55289 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.33□□□□□ -0.12
CDH12P55289 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CDH12P55289 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.33□□□□□ -0.12
CDH12P55289 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH12P55289 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH12P55289 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.32□□□□□ -0.12
CDH12P55289 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDH12P55289 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDH12P55289 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms