Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
LIG3P49916 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.22■□□□□ 0.19
LIG3P49916 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
LIG3P49916 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.22■□□□□ 0.19
LIG3P49916 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.22■□□□□ 0.19
LIG3P49916 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC16.22■□□□□ 0.19
LIG3P49916 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LIG3P49916 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.22■□□□□ 0.19
LIG3P49916 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC16.22■□□□□ 0.19
LIG3P49916 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.22■□□□□ 0.19
LIG3P49916 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 BCRP1-201ENST00000444246 691 ntBASIC16.22■□□□□ 0.19
LIG3P49916 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.22■□□□□ 0.19
LIG3P49916 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.22■□□□□ 0.19
LIG3P49916 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
LIG3P49916 MIR4321-201ENST00000592276 80 ntBASIC16.22■□□□□ 0.19
LIG3P49916 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.22■□□□□ 0.19
LIG3P49916 AL096865.1-201ENST00000606796 927 ntBASIC16.22■□□□□ 0.19
LIG3P49916 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.22■□□□□ 0.19
LIG3P49916 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.22■□□□□ 0.19
LIG3P49916 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
LIG3P49916 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 AJ011931.1-201ENST00000618749 2492 ntBASIC16.22■□□□□ 0.19
LIG3P49916 AC027601.5-201ENST00000624065 2482 ntBASIC16.22■□□□□ 0.19
LIG3P49916 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.22■□□□□ 0.19
LIG3P49916 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 BEND3P1-201ENST00000421591 1944 ntBASIC16.21■□□□□ 0.19
LIG3P49916 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC16.21■□□□□ 0.19
LIG3P49916 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC16.21■□□□□ 0.19
LIG3P49916 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
LIG3P49916 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.21■□□□□ 0.19
LIG3P49916 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.21■□□□□ 0.19
LIG3P49916 HLA-V-204ENST00000476601 1289 ntBASIC16.21■□□□□ 0.19
LIG3P49916 INGX-202ENST00000489074 768 ntBASIC16.21■□□□□ 0.19
LIG3P49916 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.21■□□□□ 0.19
LIG3P49916 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.21■□□□□ 0.19
LIG3P49916 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LIG3P49916 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.21■□□□□ 0.19
LIG3P49916 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.21■□□□□ 0.19
LIG3P49916 AC026979.3-201ENST00000607315 403 ntBASIC16.21■□□□□ 0.19
LIG3P49916 AL589739.1-201ENST00000607720 493 ntBASIC16.21■□□□□ 0.19
LIG3P49916 AL133215.2-201ENST00000609242 977 ntBASIC16.21■□□□□ 0.19
LIG3P49916 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.21■□□□□ 0.19
LIG3P49916 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.21■□□□□ 0.19
LIG3P49916 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 CETN4P-206ENST00000642099 2168 ntBASIC16.21■□□□□ 0.19
LIG3P49916 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.21■□□□□ 0.19
LIG3P49916 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LIG3P49916 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIG3P49916 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC16.21■□□□□ 0.19
LIG3P49916 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LIG3P49916 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LIG3P49916 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LIG3P49916 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.18
LIG3P49916 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LIG3P49916 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.18
LIG3P49916 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC16.2■□□□□ 0.18
LIG3P49916 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.2■□□□□ 0.18
LIG3P49916 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LIG3P49916 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 AC087386.2-201ENST00000623212 4637 ntBASIC16.2■□□□□ 0.18
LIG3P49916 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.2■□□□□ 0.18
LIG3P49916 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms