Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.54■□□□□ 0.4
SCN4AP35499 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.54■□□□□ 0.4
SCN4AP35499 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SCN4AP35499 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.54■□□□□ 0.4
SCN4AP35499 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SCN4AP35499 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
SCN4AP35499 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC17.54■□□□□ 0.4
SCN4AP35499 NME4-203ENST00000397722 1232 ntTSL 2 BASIC17.54■□□□□ 0.4
SCN4AP35499 RPL35P9-201ENST00000446059 350 ntBASIC17.54■□□□□ 0.4
SCN4AP35499 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
SCN4AP35499 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC17.54■□□□□ 0.4
SCN4AP35499 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SCN4AP35499 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC17.54■□□□□ 0.4
SCN4AP35499 FTLP5-201ENST00000586853 534 ntBASIC17.54■□□□□ 0.4
SCN4AP35499 AC021016.3-201ENST00000608367 477 ntBASIC17.54■□□□□ 0.4
SCN4AP35499 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SCN4AP35499 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SCN4AP35499 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SCN4AP35499 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.54■□□□□ 0.4
SCN4AP35499 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.54■□□□□ 0.4
SCN4AP35499 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SCN4AP35499 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SCN4AP35499 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC17.54■□□□□ 0.4
SCN4AP35499 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
SCN4AP35499 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SCN4AP35499 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.54■□□□□ 0.4
SCN4AP35499 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SCN4AP35499 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SCN4AP35499 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC17.54■□□□□ 0.4
SCN4AP35499 AC004522.1-201ENST00000419978 654 ntBASIC17.54■□□□□ 0.4
SCN4AP35499 BRI3P1-201ENST00000440440 378 ntBASIC17.54■□□□□ 0.4
SCN4AP35499 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SCN4AP35499 SRP14-204ENST00000558720 780 ntTSL 2 BASIC17.54■□□□□ 0.4
SCN4AP35499 AC068867.1-201ENST00000559855 150 ntBASIC17.54■□□□□ 0.4
SCN4AP35499 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC17.54■□□□□ 0.4
SCN4AP35499 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC17.54■□□□□ 0.4
SCN4AP35499 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC17.54■□□□□ 0.4
SCN4AP35499 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC17.54■□□□□ 0.4
SCN4AP35499 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SCN4AP35499 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SCN4AP35499 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
SCN4AP35499 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 AC004554.1-201ENST00000422830 1468 ntBASIC17.53■□□□□ 0.4
SCN4AP35499 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC17.53■□□□□ 0.4
SCN4AP35499 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SCN4AP35499 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SCN4AP35499 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SCN4AP35499 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC17.53■□□□□ 0.4
SCN4AP35499 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 RGS5-216ENST00000449680 788 ntTSL 3 BASIC17.53■□□□□ 0.4
SCN4AP35499 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC17.53■□□□□ 0.4
SCN4AP35499 RN7SL494P-201ENST00000461517 304 ntBASIC17.53■□□□□ 0.4
SCN4AP35499 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC17.53■□□□□ 0.4
SCN4AP35499 PPIA-208ENST00000489459 907 ntTSL 2 BASIC17.53■□□□□ 0.4
SCN4AP35499 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC17.53■□□□□ 0.4
SCN4AP35499 AL118522.1-201ENST00000611368 560 ntBASIC17.53■□□□□ 0.4
SCN4AP35499 PPIA-210ENST00000620047 827 ntTSL 5 BASIC17.53■□□□□ 0.4
SCN4AP35499 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.53■□□□□ 0.4
SCN4AP35499 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC17.53■□□□□ 0.4
SCN4AP35499 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SCN4AP35499 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SCN4AP35499 AL590440.2-201ENST00000641973 1595 ntBASIC17.53■□□□□ 0.4
SCN4AP35499 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SCN4AP35499 AC025183.3-201ENST00000623526 1482 ntBASIC17.53■□□□□ 0.4
SCN4AP35499 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SCN4AP35499 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SCN4AP35499 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
SCN4AP35499 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.52■□□□□ 0.4
SCN4AP35499 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SCN4AP35499 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SCN4AP35499 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SCN4AP35499 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC17.52■□□□□ 0.4
SCN4AP35499 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SCN4AP35499 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SCN4AP35499 DUX4L50-201ENST00000455245 715 ntBASIC17.52■□□□□ 0.4
SCN4AP35499 RN7SL23P-201ENST00000484055 275 ntBASIC17.52■□□□□ 0.4
SCN4AP35499 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC17.52■□□□□ 0.4
SCN4AP35499 RBM4-207ENST00000506523 654 ntTSL 3 BASIC17.52■□□□□ 0.4
SCN4AP35499 AC131206.1-201ENST00000538078 1211 ntBASIC17.52■□□□□ 0.4
SCN4AP35499 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC17.52■□□□□ 0.4
SCN4AP35499 ABHD17AP9-201ENST00000561925 548 ntBASIC17.52■□□□□ 0.4
SCN4AP35499 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC17.52■□□□□ 0.4
SCN4AP35499 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC17.52■□□□□ 0.4
SCN4AP35499 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
SCN4AP35499 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.52■□□□□ 0.4
SCN4AP35499 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms