Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC008825.2-201ENST00000603374 718 ntBASIC19.98■□□□□ 0.79
HOXC9P31274 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC19.98■□□□□ 0.79
HOXC9P31274 AL136295.7-201ENST00000619226 1200 ntBASIC19.98■□□□□ 0.79
HOXC9P31274 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC9P31274 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC9P31274 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC19.98■□□□□ 0.79
HOXC9P31274 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC9P31274 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC9P31274 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
HOXC9P31274 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC9P31274 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
HOXC9P31274 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC9P31274 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
HOXC9P31274 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC9P31274 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC9P31274 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 FAM90A7P-201ENST00000382628 1395 ntBASIC19.97■□□□□ 0.79
HOXC9P31274 FAM90A23P-201ENST00000400136 1395 ntBASIC19.97■□□□□ 0.79
HOXC9P31274 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
HOXC9P31274 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
HOXC9P31274 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC9P31274 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC19.97■□□□□ 0.79
HOXC9P31274 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC9P31274 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC19.97■□□□□ 0.79
HOXC9P31274 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 ISCA2P1-201ENST00000425548 448 ntBASIC19.97■□□□□ 0.79
HOXC9P31274 PDIA3P2-201ENST00000428073 158 ntBASIC19.97■□□□□ 0.79
HOXC9P31274 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC9P31274 PRKXP1-201ENST00000561423 1122 ntBASIC19.97■□□□□ 0.79
HOXC9P31274 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC9P31274 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
HOXC9P31274 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC9P31274 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC9P31274 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC9P31274 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 AL008718.2-201ENST00000609206 1313 ntBASIC19.97■□□□□ 0.79
HOXC9P31274 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
HOXC9P31274 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC9P31274 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
HOXC9P31274 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
HOXC9P31274 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC19.96■□□□□ 0.79
HOXC9P31274 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC19.96■□□□□ 0.79
HOXC9P31274 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 C18orf15-201ENST00000623680 2534 ntBASIC19.96■□□□□ 0.79
HOXC9P31274 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 RN7SKP214-201ENST00000364208 315 ntBASIC19.96■□□□□ 0.79
HOXC9P31274 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
HOXC9P31274 MPV17-204ENST00000399052 749 ntTSL 4 BASIC19.96■□□□□ 0.79
HOXC9P31274 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC19.96■□□□□ 0.79
HOXC9P31274 EEF1DP6-201ENST00000449232 372 ntBASIC19.96■□□□□ 0.79
HOXC9P31274 RCC2P8-201ENST00000502779 1035 ntBASIC19.96■□□□□ 0.79
HOXC9P31274 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC19.96■□□□□ 0.79
HOXC9P31274 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC19.96■□□□□ 0.79
HOXC9P31274 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
HOXC9P31274 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.96■□□□□ 0.79
HOXC9P31274 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
HOXC9P31274 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 AC087481.3-201ENST00000602886 1894 ntBASIC19.96■□□□□ 0.79
HOXC9P31274 REXO1L2P-201ENST00000425429 2069 ntBASIC19.96■□□□□ 0.79
HOXC9P31274 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.96■□□□□ 0.79
HOXC9P31274 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
HOXC9P31274 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC9P31274 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC19.95■□□□□ 0.79
HOXC9P31274 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 AMT-204ENST00000427987 1646 ntTSL 5 BASIC19.95■□□□□ 0.78
HOXC9P31274 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC9P31274 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms