Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC13.9□□□□□ -0.18
FREM3P0C091 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
FREM3P0C091 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.9□□□□□ -0.18
FREM3P0C091 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.9□□□□□ -0.18
FREM3P0C091 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FREM3P0C091 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
FREM3P0C091 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
FREM3P0C091 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.19
FREM3P0C091 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
FREM3P0C091 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.9□□□□□ -0.19
FREM3P0C091 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.89□□□□□ -0.19
FREM3P0C091 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.89□□□□□ -0.19
FREM3P0C091 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
FREM3P0C091 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
FREM3P0C091 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
FREM3P0C091 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
FREM3P0C091 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.89□□□□□ -0.19
FREM3P0C091 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
FREM3P0C091 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.89□□□□□ -0.19
FREM3P0C091 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
FREM3P0C091 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.89□□□□□ -0.19
FREM3P0C091 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.89□□□□□ -0.19
FREM3P0C091 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
FREM3P0C091 GAPDHP40-201ENST00000505218 1006 ntBASIC13.89□□□□□ -0.19
FREM3P0C091 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 DUX4L45-201ENST00000566406 1057 ntBASIC13.89□□□□□ -0.19
FREM3P0C091 AL512343.1-201ENST00000605837 169 ntBASIC13.89□□□□□ -0.19
FREM3P0C091 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.89□□□□□ -0.19
FREM3P0C091 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.89□□□□□ -0.19
FREM3P0C091 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC13.89□□□□□ -0.19
FREM3P0C091 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.89□□□□□ -0.19
FREM3P0C091 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
FREM3P0C091 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.89□□□□□ -0.19
FREM3P0C091 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.89□□□□□ -0.19
FREM3P0C091 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
FREM3P0C091 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
FREM3P0C091 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.89□□□□□ -0.19
FREM3P0C091 TCAF2P1-201ENST00000291129 2421 ntBASIC13.89□□□□□ -0.19
FREM3P0C091 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.89□□□□□ -0.19
FREM3P0C091 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
FREM3P0C091 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.89□□□□□ -0.19
FREM3P0C091 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.89□□□□□ -0.19
FREM3P0C091 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
FREM3P0C091 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.88□□□□□ -0.19
FREM3P0C091 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.88□□□□□ -0.19
FREM3P0C091 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
FREM3P0C091 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.88□□□□□ -0.19
FREM3P0C091 AL355994.2-201ENST00000447882 704 ntBASIC13.88□□□□□ -0.19
FREM3P0C091 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.88□□□□□ -0.19
FREM3P0C091 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.88□□□□□ -0.19
FREM3P0C091 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.88□□□□□ -0.19
FREM3P0C091 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.88□□□□□ -0.19
FREM3P0C091 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.88□□□□□ -0.19
FREM3P0C091 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
FREM3P0C091 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
FREM3P0C091 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
FREM3P0C091 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC13.88□□□□□ -0.19
FREM3P0C091 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.88□□□□□ -0.19
FREM3P0C091 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
FREM3P0C091 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FREM3P0C091 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms