Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 USB1-203ENST00000539737 1212 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXC4P09017 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXC4P09017 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
HOXC4P09017 AL096828.3-201ENST00000615354 462 ntBASIC14.8□□□□□ -0.04
HOXC4P09017 AL008638.5-201ENST00000623814 1298 ntBASIC14.8□□□□□ -0.04
HOXC4P09017 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXC4P09017 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXC4P09017 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXC4P09017 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HOXC4P09017 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXC4P09017 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXC4P09017 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HOXC4P09017 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXC4P09017 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXC4P09017 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
HOXC4P09017 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXC4P09017 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXC4P09017 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXC4P09017 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
HOXC4P09017 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXC4P09017 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
HOXC4P09017 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 AL354877.1-201ENST00000424412 413 ntBASIC14.79□□□□□ -0.04
HOXC4P09017 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.79□□□□□ -0.04
HOXC4P09017 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC14.79□□□□□ -0.04
HOXC4P09017 AC104306.2-201ENST00000451877 341 ntBASIC14.79□□□□□ -0.04
HOXC4P09017 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HOXC4P09017 KRT8P13-201ENST00000463294 1010 ntBASIC14.79□□□□□ -0.04
HOXC4P09017 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 AC100850.1-201ENST00000506768 649 ntBASIC14.79□□□□□ -0.04
HOXC4P09017 CD74-212ENST00000524315 584 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXC4P09017 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXC4P09017 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.79□□□□□ -0.04
HOXC4P09017 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC14.79□□□□□ -0.04
HOXC4P09017 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 AC068418.2-201ENST00000577309 3703 ntBASIC14.79□□□□□ -0.04
HOXC4P09017 AL118558.3-201ENST00000607414 1079 ntBASIC14.79□□□□□ -0.04
HOXC4P09017 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXC4P09017 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.79□□□□□ -0.04
HOXC4P09017 AP001002.3-201ENST00000623482 206 ntBASIC14.79□□□□□ -0.04
HOXC4P09017 ABBA01031663.1-201ENST00000635630 790 ntBASIC14.79□□□□□ -0.04
HOXC4P09017 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXC4P09017 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HOXC4P09017 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXC4P09017 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXC4P09017 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 REXO1L2P-201ENST00000425429 2069 ntBASIC14.78□□□□□ -0.04
HOXC4P09017 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HOXC4P09017 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
HOXC4P09017 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
HOXC4P09017 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXC4P09017 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
HOXC4P09017 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 MIR1247-201ENST00000408206 136 ntBASIC14.78□□□□□ -0.04
HOXC4P09017 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.78□□□□□ -0.04
HOXC4P09017 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.78□□□□□ -0.04
HOXC4P09017 GPAA1P2-201ENST00000417923 928 ntBASIC14.78□□□□□ -0.04
HOXC4P09017 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC14.78□□□□□ -0.04
HOXC4P09017 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC14.78□□□□□ -0.04
HOXC4P09017 AP001258.2-201ENST00000529891 490 ntBASIC14.78□□□□□ -0.04
HOXC4P09017 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC14.78□□□□□ -0.04
HOXC4P09017 RNF41-210ENST00000552244 716 ntTSL 3 BASIC14.78□□□□□ -0.04
HOXC4P09017 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC14.78□□□□□ -0.04
HOXC4P09017 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms