Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.48■□□□□ 0.07
VIMP08670 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VIMP08670 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.47■□□□□ 0.07
VIMP08670 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.47■□□□□ 0.07
VIMP08670 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.47■□□□□ 0.07
VIMP08670 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
VIMP08670 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
VIMP08670 TCAF1P1-201ENST00000414990 2232 ntBASIC15.47■□□□□ 0.07
VIMP08670 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
VIMP08670 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC15.47■□□□□ 0.07
VIMP08670 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
VIMP08670 OR7E14P-202ENST00000530490 1290 ntBASIC15.47■□□□□ 0.07
VIMP08670 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 AC084364.1-201ENST00000551967 1556 ntBASIC15.47■□□□□ 0.07
VIMP08670 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.47■□□□□ 0.07
VIMP08670 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.47■□□□□ 0.07
VIMP08670 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.47■□□□□ 0.07
VIMP08670 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 AC024267.1-201ENST00000582320 895 ntBASIC15.47■□□□□ 0.07
VIMP08670 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
VIMP08670 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
VIMP08670 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
VIMP08670 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.47■□□□□ 0.07
VIMP08670 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.47■□□□□ 0.07
VIMP08670 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VIMP08670 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
VIMP08670 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
VIMP08670 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VIMP08670 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
VIMP08670 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
VIMP08670 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VIMP08670 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VIMP08670 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
VIMP08670 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VIMP08670 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
VIMP08670 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VIMP08670 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.46■□□□□ 0.07
VIMP08670 KRT18P35-201ENST00000510488 1269 ntBASIC15.46■□□□□ 0.07
VIMP08670 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.46■□□□□ 0.07
VIMP08670 AC061975.2-201ENST00000581722 295 ntBASIC15.46■□□□□ 0.07
VIMP08670 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
VIMP08670 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
VIMP08670 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VIMP08670 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VIMP08670 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
VIMP08670 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC15.46■□□□□ 0.07
VIMP08670 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.46■□□□□ 0.07
VIMP08670 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VIMP08670 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.06
VIMP08670 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
VIMP08670 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC15.46■□□□□ 0.06
VIMP08670 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC15.46■□□□□ 0.06
VIMP08670 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
VIMP08670 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
VIMP08670 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
VIMP08670 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
VIMP08670 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
VIMP08670 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC15.46■□□□□ 0.06
VIMP08670 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
VIMP08670 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.46■□□□□ 0.06
VIMP08670 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
VIMP08670 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
VIMP08670 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
VIMP08670 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.45■□□□□ 0.06
VIMP08670 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms