Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.27■□□□□ 0.52
COL4A1P02462 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
COL4A1P02462 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC18.27■□□□□ 0.52
COL4A1P02462 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A1P02462 RPL17P11-201ENST00000417593 544 ntBASIC18.27■□□□□ 0.52
COL4A1P02462 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC18.27■□□□□ 0.52
COL4A1P02462 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC18.27■□□□□ 0.52
COL4A1P02462 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
COL4A1P02462 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC18.27■□□□□ 0.52
COL4A1P02462 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL4A1P02462 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.27■□□□□ 0.52
COL4A1P02462 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
COL4A1P02462 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC18.27■□□□□ 0.52
COL4A1P02462 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC18.27■□□□□ 0.52
COL4A1P02462 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL4A1P02462 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
COL4A1P02462 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
COL4A1P02462 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL4A1P02462 ZBED1P1-201ENST00000502364 1930 ntBASIC18.27■□□□□ 0.51
COL4A1P02462 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL4A1P02462 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC18.26■□□□□ 0.51
COL4A1P02462 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 API5-203ENST00000455725 2257 ntTSL 2 BASIC18.26■□□□□ 0.51
COL4A1P02462 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC18.26■□□□□ 0.51
COL4A1P02462 IGF1-203ENST00000392904 761 ntTSL 5 BASIC18.26■□□□□ 0.51
COL4A1P02462 AL008707.1-201ENST00000422498 534 ntBASIC18.26■□□□□ 0.51
COL4A1P02462 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC18.26■□□□□ 0.51
COL4A1P02462 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC18.26■□□□□ 0.51
COL4A1P02462 NAT9-211ENST00000580632 799 ntTSL 3 BASIC18.26■□□□□ 0.51
COL4A1P02462 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC18.26■□□□□ 0.51
COL4A1P02462 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
COL4A1P02462 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 KRT8P28-201ENST00000433288 1390 ntBASIC18.26■□□□□ 0.51
COL4A1P02462 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
COL4A1P02462 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
COL4A1P02462 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.26■□□□□ 0.51
COL4A1P02462 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
COL4A1P02462 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
COL4A1P02462 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.26■□□□□ 0.51
COL4A1P02462 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC18.26■□□□□ 0.51
COL4A1P02462 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A1P02462 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC18.26■□□□□ 0.51
COL4A1P02462 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.26■□□□□ 0.51
COL4A1P02462 CICP23-201ENST00000605013 2741 ntBASIC18.26■□□□□ 0.51
COL4A1P02462 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A1P02462 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC18.25■□□□□ 0.51
COL4A1P02462 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC18.25■□□□□ 0.51
COL4A1P02462 VPS18-202ENST00000558474 873 ntTSL 3 BASIC18.25■□□□□ 0.51
COL4A1P02462 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
COL4A1P02462 BX088702.1-201ENST00000610784 235 ntBASIC18.25■□□□□ 0.51
COL4A1P02462 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 MIR6727-201ENST00000620702 65 ntBASIC18.25■□□□□ 0.51
COL4A1P02462 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC18.25■□□□□ 0.51
COL4A1P02462 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A1P02462 PAUPAR-201ENST00000630360 2965 ntBASIC18.25■□□□□ 0.51
COL4A1P02462 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A1P02462 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A1P02462 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 AC132872.4-202ENST00000622924 2756 ntBASIC18.25■□□□□ 0.51
COL4A1P02462 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A1P02462 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
COL4A1P02462 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
COL4A1P02462 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A1P02462 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC18.25■□□□□ 0.51
COL4A1P02462 ACE3P-201ENST00000423435 1973 ntBASIC18.25■□□□□ 0.51
COL4A1P02462 RN7SL67P-201ENST00000492147 296 ntBASIC18.25■□□□□ 0.51
COL4A1P02462 AC090857.1-201ENST00000527400 390 ntBASIC18.25■□□□□ 0.51
COL4A1P02462 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A1P02462 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC18.25■□□□□ 0.51
COL4A1P02462 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A1P02462 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms