Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 AC009486.1-201ENST00000569860 813 ntBASIC12.91□□□□□ -0.34
ABCA1O95477 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 AC007686.3-201ENST00000619017 3487 ntBASIC12.91□□□□□ -0.34
ABCA1O95477 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC12.91□□□□□ -0.34
ABCA1O95477 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC12.91□□□□□ -0.34
ABCA1O95477 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC12.91□□□□□ -0.34
ABCA1O95477 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
ABCA1O95477 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 AC005077.2-201ENST00000449786 690 ntBASIC12.91□□□□□ -0.34
ABCA1O95477 Z93015.1-201ENST00000451718 390 ntBASIC12.91□□□□□ -0.34
ABCA1O95477 AL591846.1-201ENST00000451736 433 ntBASIC12.91□□□□□ -0.34
ABCA1O95477 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC12.91□□□□□ -0.34
ABCA1O95477 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 AC078819.1-201ENST00000547454 765 ntBASIC12.91□□□□□ -0.34
ABCA1O95477 AC012085.1-201ENST00000548270 765 ntBASIC12.91□□□□□ -0.34
ABCA1O95477 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
ABCA1O95477 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC12.91□□□□□ -0.34
ABCA1O95477 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 AC016629.1-201ENST00000596579 586 ntBASIC12.91□□□□□ -0.34
ABCA1O95477 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
ABCA1O95477 AC107373.2-201ENST00000607735 490 ntBASIC12.91□□□□□ -0.34
ABCA1O95477 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
ABCA1O95477 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
ABCA1O95477 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
ABCA1O95477 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC12.91□□□□□ -0.34
ABCA1O95477 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA1O95477 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
ABCA1O95477 AL513523.2-202ENST00000427283 2040 ntBASIC12.9□□□□□ -0.34
ABCA1O95477 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
ABCA1O95477 AL592424.1-201ENST00000563624 1536 ntBASIC12.9□□□□□ -0.34
ABCA1O95477 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC12.9□□□□□ -0.34
ABCA1O95477 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC12.9□□□□□ -0.34
ABCA1O95477 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
ABCA1O95477 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC12.9□□□□□ -0.34
ABCA1O95477 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
ABCA1O95477 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
ABCA1O95477 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
ABCA1O95477 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC12.9□□□□□ -0.34
ABCA1O95477 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC12.9□□□□□ -0.34
ABCA1O95477 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC12.9□□□□□ -0.34
ABCA1O95477 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC12.9□□□□□ -0.34
ABCA1O95477 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC12.9□□□□□ -0.34
ABCA1O95477 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC12.9□□□□□ -0.34
ABCA1O95477 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC12.9□□□□□ -0.34
ABCA1O95477 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC12.9□□□□□ -0.34
ABCA1O95477 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC12.9□□□□□ -0.34
ABCA1O95477 AP001258.2-201ENST00000529891 490 ntBASIC12.9□□□□□ -0.34
ABCA1O95477 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC12.9□□□□□ -0.34
ABCA1O95477 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 KRT8P19-201ENST00000551916 1455 ntBASIC12.9□□□□□ -0.34
ABCA1O95477 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC12.9□□□□□ -0.34
ABCA1O95477 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
ABCA1O95477 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC12.9□□□□□ -0.34
ABCA1O95477 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.9□□□□□ -0.34
ABCA1O95477 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC12.9□□□□□ -0.34
ABCA1O95477 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
ABCA1O95477 ABR-203ENST00000536794 2213 ntTSL 2 BASIC12.9□□□□□ -0.34
ABCA1O95477 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA1O95477 CYP2T1P-202ENST00000641596 2535 ntBASIC12.9□□□□□ -0.35
ABCA1O95477 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
ABCA1O95477 AC131212.3-201ENST00000624087 4219 ntBASIC12.9□□□□□ -0.35
ABCA1O95477 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.35
ABCA1O95477 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms