Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS4BO75351 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.09■□□□□ 0.01
VPS4BO75351 GHSR-202ENST00000427970 912 ntBASIC15.09■□□□□ 0.01
VPS4BO75351 RPS2P32-201ENST00000439199 892 ntBASIC15.09■□□□□ 0.01
VPS4BO75351 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS4BO75351 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC15.09■□□□□ 0.01
VPS4BO75351 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.09■□□□□ 0.01
VPS4BO75351 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS4BO75351 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS4BO75351 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
VPS4BO75351 AL138828.2-201ENST00000615812 383 ntBASIC15.09■□□□□ 0.01
VPS4BO75351 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
VPS4BO75351 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS4BO75351 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
VPS4BO75351 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
VPS4BO75351 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
VPS4BO75351 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4BO75351 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
VPS4BO75351 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
VPS4BO75351 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.08■□□□□ 0.01
VPS4BO75351 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
VPS4BO75351 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
VPS4BO75351 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.08■□□□□ 0.01
VPS4BO75351 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
VPS4BO75351 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.08■□□□□ 0.01
VPS4BO75351 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
VPS4BO75351 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
VPS4BO75351 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
VPS4BO75351 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
VPS4BO75351 AC026748.1-201ENST00000624349 3251 ntBASIC15.08■□□□□ 0
VPS4BO75351 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.08■□□□□ 0
VPS4BO75351 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.08■□□□□ 0
VPS4BO75351 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.08■□□□□ 0
VPS4BO75351 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.08■□□□□ 0
VPS4BO75351 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
VPS4BO75351 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
VPS4BO75351 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC15.08■□□□□ 0
VPS4BO75351 AP006294.1-201ENST00000415407 339 ntBASIC15.08■□□□□ 0
VPS4BO75351 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.08■□□□□ 0
VPS4BO75351 RN7SL752P-201ENST00000463779 287 ntBASIC15.08■□□□□ 0
VPS4BO75351 HLA-V-204ENST00000476601 1289 ntBASIC15.08■□□□□ 0
VPS4BO75351 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.08■□□□□ 0
VPS4BO75351 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.08■□□□□ 0
VPS4BO75351 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.08■□□□□ 0
VPS4BO75351 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 MIR6805-201ENST00000615055 62 ntBASIC15.08■□□□□ 0
VPS4BO75351 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
VPS4BO75351 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.08■□□□□ 0
VPS4BO75351 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.08■□□□□ 0
VPS4BO75351 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
VPS4BO75351 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 GRK6P1-201ENST00000400595 1711 ntBASIC15.08■□□□□ 0
VPS4BO75351 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.08■□□□□ 0
VPS4BO75351 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.08■□□□□ 0
VPS4BO75351 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VPS4BO75351 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
VPS4BO75351 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
VPS4BO75351 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
VPS4BO75351 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.07■□□□□ 0
VPS4BO75351 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.07■□□□□ 0
VPS4BO75351 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.07■□□□□ 0
VPS4BO75351 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.07■□□□□ 0
VPS4BO75351 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.07■□□□□ 0
VPS4BO75351 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.07■□□□□ 0
VPS4BO75351 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.07■□□□□ 0
VPS4BO75351 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.07■□□□□ 0
VPS4BO75351 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.07■□□□□ 0
VPS4BO75351 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.07■□□□□ 0
VPS4BO75351 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms