Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CACNA1FO60840 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC18.88■□□□□ 0.61
CACNA1FO60840 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC18.88■□□□□ 0.61
CACNA1FO60840 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC18.88■□□□□ 0.61
CACNA1FO60840 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC18.88■□□□□ 0.61
CACNA1FO60840 AC022748.3-201ENST00000621828 275 ntBASIC18.88■□□□□ 0.61
CACNA1FO60840 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
CACNA1FO60840 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC18.88■□□□□ 0.61
CACNA1FO60840 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CACNA1FO60840 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CACNA1FO60840 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC18.88■□□□□ 0.61
CACNA1FO60840 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CACNA1FO60840 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 SMS-201ENST00000379404 1174 ntTSL 3 BASIC18.88■□□□□ 0.61
CACNA1FO60840 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC18.88■□□□□ 0.61
CACNA1FO60840 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 FAM58BP-201ENST00000439056 645 ntBASIC18.88■□□□□ 0.61
CACNA1FO60840 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC18.88■□□□□ 0.61
CACNA1FO60840 TPT1P11-201ENST00000458482 498 ntBASIC18.88■□□□□ 0.61
CACNA1FO60840 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.88■□□□□ 0.61
CACNA1FO60840 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC18.88■□□□□ 0.61
CACNA1FO60840 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC18.88■□□□□ 0.61
CACNA1FO60840 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CACNA1FO60840 KC6-205ENST00000599934 556 ntTSL 4 BASIC18.88■□□□□ 0.61
CACNA1FO60840 AC243960.2-201ENST00000600996 747 ntBASIC18.88■□□□□ 0.61
CACNA1FO60840 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
CACNA1FO60840 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 AL354702.1-201ENST00000442006 1960 ntBASIC18.88■□□□□ 0.61
CACNA1FO60840 MX1-218ENST00000619682 1980 ntTSL 5 BASIC18.88■□□□□ 0.61
CACNA1FO60840 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC18.87■□□□□ 0.61
CACNA1FO60840 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
CACNA1FO60840 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CACNA1FO60840 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC18.87■□□□□ 0.61
CACNA1FO60840 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
CACNA1FO60840 AC008825.2-201ENST00000603374 718 ntBASIC18.87■□□□□ 0.61
CACNA1FO60840 AL023803.2-201ENST00000620080 638 ntBASIC18.87■□□□□ 0.61
CACNA1FO60840 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 AC015818.8-201ENST00000587907 1519 ntBASIC18.87■□□□□ 0.61
CACNA1FO60840 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC18.87■□□□□ 0.61
CACNA1FO60840 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CACNA1FO60840 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC18.87■□□□□ 0.61
CACNA1FO60840 MRPL37P1-201ENST00000592451 1337 ntBASIC18.87■□□□□ 0.61
CACNA1FO60840 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CACNA1FO60840 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CACNA1FO60840 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CACNA1FO60840 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC18.87■□□□□ 0.61
CACNA1FO60840 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC18.87■□□□□ 0.61
CACNA1FO60840 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CACNA1FO60840 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CACNA1FO60840 AL390755.1-201ENST00000623716 2027 ntBASIC18.86■□□□□ 0.61
CACNA1FO60840 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CACNA1FO60840 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CACNA1FO60840 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CACNA1FO60840 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
CACNA1FO60840 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC18.86■□□□□ 0.61
CACNA1FO60840 AC005962.1-201ENST00000584100 773 ntBASIC18.86■□□□□ 0.61
CACNA1FO60840 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC18.86■□□□□ 0.61
CACNA1FO60840 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CACNA1FO60840 AC068587.8-201ENST00000641239 219 ntBASIC18.86■□□□□ 0.61
CACNA1FO60840 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CACNA1FO60840 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.86■□□□□ 0.61
CACNA1FO60840 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC18.86■□□□□ 0.61
CACNA1FO60840 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CACNA1FO60840 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CACNA1FO60840 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CACNA1FO60840 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC18.86■□□□□ 0.61
CACNA1FO60840 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CACNA1FO60840 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CACNA1FO60840 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CACNA1FO60840 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC18.86■□□□□ 0.61
CACNA1FO60840 MARK2P5-201ENST00000507649 634 ntBASIC18.86■□□□□ 0.61
CACNA1FO60840 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms