Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPHP1O15259 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.3■□□□□ 0.68
NPHP1O15259 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.3■□□□□ 0.68
NPHP1O15259 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC19.3■□□□□ 0.68
NPHP1O15259 REEP1-202ENST00000453231 940 ntTSL 2 BASIC19.3■□□□□ 0.68
NPHP1O15259 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC19.3■□□□□ 0.68
NPHP1O15259 AC126915.1-201ENST00000522847 1038 ntBASIC19.3■□□□□ 0.68
NPHP1O15259 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
NPHP1O15259 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC19.3■□□□□ 0.68
NPHP1O15259 AC007663.3-201ENST00000609632 465 ntBASIC19.3■□□□□ 0.68
NPHP1O15259 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
NPHP1O15259 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPHP1O15259 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPHP1O15259 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPHP1O15259 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPHP1O15259 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
NPHP1O15259 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.29■□□□□ 0.68
NPHP1O15259 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.29■□□□□ 0.68
NPHP1O15259 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
NPHP1O15259 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 TISP43-201ENST00000409793 538 ntTSL 4 BASIC19.29■□□□□ 0.68
NPHP1O15259 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC19.29■□□□□ 0.68
NPHP1O15259 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC19.29■□□□□ 0.68
NPHP1O15259 COX5BP1-201ENST00000507622 393 ntBASIC19.29■□□□□ 0.68
NPHP1O15259 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC19.29■□□□□ 0.68
NPHP1O15259 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC19.29■□□□□ 0.68
NPHP1O15259 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC19.29■□□□□ 0.68
NPHP1O15259 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
NPHP1O15259 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.29■□□□□ 0.68
NPHP1O15259 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
NPHP1O15259 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.29■□□□□ 0.68
NPHP1O15259 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.29■□□□□ 0.68
NPHP1O15259 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPHP1O15259 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.28■□□□□ 0.68
NPHP1O15259 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
NPHP1O15259 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
NPHP1O15259 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC19.28■□□□□ 0.68
NPHP1O15259 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
NPHP1O15259 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.28■□□□□ 0.68
NPHP1O15259 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 MIR769-201ENST00000390225 118 ntBASIC19.28■□□□□ 0.68
NPHP1O15259 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC19.28■□□□□ 0.68
NPHP1O15259 HNRNPA1P63-201ENST00000427917 963 ntBASIC19.28■□□□□ 0.68
NPHP1O15259 HSPB1P2-201ENST00000448722 546 ntBASIC19.28■□□□□ 0.68
NPHP1O15259 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC19.28■□□□□ 0.68
NPHP1O15259 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC19.28■□□□□ 0.68
NPHP1O15259 PFN2-205ENST00000461868 613 ntTSL 2 BASIC19.28■□□□□ 0.68
NPHP1O15259 AC004066.1-201ENST00000502488 802 ntBASIC19.28■□□□□ 0.68
NPHP1O15259 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 HCG18-245ENST00000602550 559 ntTSL 4 BASIC19.28■□□□□ 0.68
NPHP1O15259 AC138649.2-201ENST00000615886 705 ntBASIC19.28■□□□□ 0.68
NPHP1O15259 AC244157.2-201ENST00000616239 1006 ntBASIC19.28■□□□□ 0.68
NPHP1O15259 AC015967.2-201ENST00000624092 234 ntBASIC19.28■□□□□ 0.68
NPHP1O15259 AC006435.4-201ENST00000625037 234 ntBASIC19.28■□□□□ 0.68
NPHP1O15259 AL356737.1-201ENST00000634391 234 ntBASIC19.28■□□□□ 0.68
NPHP1O15259 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC19.28■□□□□ 0.68
NPHP1O15259 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 AC018735.1-201ENST00000437208 1502 ntBASIC19.28■□□□□ 0.68
NPHP1O15259 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
NPHP1O15259 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC19.28■□□□□ 0.68
NPHP1O15259 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC19.28■□□□□ 0.68
NPHP1O15259 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC19.28■□□□□ 0.68
NPHP1O15259 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.28■□□□□ 0.68
NPHP1O15259 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.28■□□□□ 0.68
NPHP1O15259 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 AL662844.4-201ENST00000606367 2838 ntBASIC19.28■□□□□ 0.68
NPHP1O15259 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPHP1O15259 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPHP1O15259 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NPHP1O15259 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NPHP1O15259 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPHP1O15259 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms