Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SHANK1Q9Y566 FOXO3B-201ENST00000395675 1928 ntBASIC21.02■□□□□ 0.96
SHANK1Q9Y566 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.02■□□□□ 0.96
SHANK1Q9Y566 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHANK1Q9Y566 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
SHANK1Q9Y566 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.02■□□□□ 0.95
SHANK1Q9Y566 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHANK1Q9Y566 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.01■□□□□ 0.95
SHANK1Q9Y566 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.01■□□□□ 0.95
SHANK1Q9Y566 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.01■□□□□ 0.95
SHANK1Q9Y566 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.01■□□□□ 0.95
SHANK1Q9Y566 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SHANK1Q9Y566 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.01■□□□□ 0.95
SHANK1Q9Y566 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
SHANK1Q9Y566 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.01■□□□□ 0.95
SHANK1Q9Y566 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHANK1Q9Y566 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21■□□□□ 0.95
SHANK1Q9Y566 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21■□□□□ 0.95
SHANK1Q9Y566 DUX4L19-201ENST00000557448 1267 ntBASIC21■□□□□ 0.95
SHANK1Q9Y566 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21■□□□□ 0.95
SHANK1Q9Y566 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SHANK1Q9Y566 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21■□□□□ 0.95
SHANK1Q9Y566 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21■□□□□ 0.95
SHANK1Q9Y566 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHANK1Q9Y566 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHANK1Q9Y566 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHANK1Q9Y566 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.99■□□□□ 0.95
SHANK1Q9Y566 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHANK1Q9Y566 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHANK1Q9Y566 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.98■□□□□ 0.95
SHANK1Q9Y566 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.98■□□□□ 0.95
SHANK1Q9Y566 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SHANK1Q9Y566 SRD5A1P1-201ENST00000442297 786 ntBASIC20.98■□□□□ 0.95
SHANK1Q9Y566 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SHANK1Q9Y566 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.98■□□□□ 0.95
SHANK1Q9Y566 RASA4CP-201ENST00000424092 1398 ntBASIC20.98■□□□□ 0.95
SHANK1Q9Y566 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK1Q9Y566 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK1Q9Y566 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK1Q9Y566 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.97■□□□□ 0.95
SHANK1Q9Y566 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHANK1Q9Y566 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 AC091305.1-201ENST00000479476 895 ntBASIC20.96■□□□□ 0.95
SHANK1Q9Y566 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 AC090192.1-201ENST00000517740 490 ntBASIC20.96■□□□□ 0.95
SHANK1Q9Y566 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.96■□□□□ 0.95
SHANK1Q9Y566 AC090877.2-201ENST00000558441 1738 ntBASIC20.95■□□□□ 0.94
SHANK1Q9Y566 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.95■□□□□ 0.94
SHANK1Q9Y566 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHANK1Q9Y566 AC135731.1-201ENST00000569415 2548 ntBASIC20.95■□□□□ 0.94
SHANK1Q9Y566 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.95■□□□□ 0.94
SHANK1Q9Y566 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.95■□□□□ 0.94
SHANK1Q9Y566 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.94■□□□□ 0.94
SHANK1Q9Y566 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SHANK1Q9Y566 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SHANK1Q9Y566 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.94■□□□□ 0.94
SHANK1Q9Y566 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.94■□□□□ 0.94
SHANK1Q9Y566 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHANK1Q9Y566 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SHANK1Q9Y566 CA15P2-201ENST00000611168 834 ntBASIC20.93■□□□□ 0.94
SHANK1Q9Y566 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK1Q9Y566 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHANK1Q9Y566 AC034268.1-201ENST00000441047 882 ntBASIC20.93■□□□□ 0.94
SHANK1Q9Y566 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.93■□□□□ 0.94
SHANK1Q9Y566 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.93■□□□□ 0.94
SHANK1Q9Y566 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 SYT6-210ENST00000641643 1587 ntBASIC20.92■□□□□ 0.94
SHANK1Q9Y566 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 MIR4767-201ENST00000582827 78 ntBASIC20.92■□□□□ 0.94
SHANK1Q9Y566 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 SERBP1P1-201ENST00000396021 1160 ntBASIC20.92■□□□□ 0.94
SHANK1Q9Y566 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK1Q9Y566 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK1Q9Y566 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK1Q9Y566 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.91■□□□□ 0.94
SHANK1Q9Y566 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms