Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
TRIM35Q9UPQ4 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.31■■■□□ 2.44
TRIM35Q9UPQ4 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC30.31■■■□□ 2.44
TRIM35Q9UPQ4 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
TRIM35Q9UPQ4 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC30.31■■■□□ 2.44
TRIM35Q9UPQ4 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC30.3■■■□□ 2.44
TRIM35Q9UPQ4 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
TRIM35Q9UPQ4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC30.3■■■□□ 2.44
TRIM35Q9UPQ4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC30.3■■■□□ 2.44
TRIM35Q9UPQ4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC30.3■■■□□ 2.44
TRIM35Q9UPQ4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
TRIM35Q9UPQ4 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
TRIM35Q9UPQ4 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
TRIM35Q9UPQ4 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
TRIM35Q9UPQ4 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC30.28■■■□□ 2.44
TRIM35Q9UPQ4 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
TRIM35Q9UPQ4 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
TRIM35Q9UPQ4 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC30.28■■■□□ 2.44
TRIM35Q9UPQ4 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC30.28■■■□□ 2.44
TRIM35Q9UPQ4 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC30.28■■■□□ 2.44
TRIM35Q9UPQ4 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
TRIM35Q9UPQ4 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
TRIM35Q9UPQ4 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC30.27■■■□□ 2.44
TRIM35Q9UPQ4 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC30.27■■■□□ 2.44
TRIM35Q9UPQ4 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
TRIM35Q9UPQ4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
TRIM35Q9UPQ4 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.27■■■□□ 2.44
TRIM35Q9UPQ4 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC30.27■■■□□ 2.44
TRIM35Q9UPQ4 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
TRIM35Q9UPQ4 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC30.27■■■□□ 2.44
TRIM35Q9UPQ4 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
TRIM35Q9UPQ4 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
TRIM35Q9UPQ4 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
TRIM35Q9UPQ4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC30.26■■■□□ 2.43
TRIM35Q9UPQ4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC30.26■■■□□ 2.43
TRIM35Q9UPQ4 AC004448.1-201ENST00000458332 883 ntBASIC30.26■■■□□ 2.43
TRIM35Q9UPQ4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC30.26■■■□□ 2.43
TRIM35Q9UPQ4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC30.26■■■□□ 2.43
TRIM35Q9UPQ4 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
TRIM35Q9UPQ4 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC30.25■■■□□ 2.43
TRIM35Q9UPQ4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
TRIM35Q9UPQ4 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC30.25■■■□□ 2.43
TRIM35Q9UPQ4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC30.25■■■□□ 2.43
TRIM35Q9UPQ4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
TRIM35Q9UPQ4 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
TRIM35Q9UPQ4 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
TRIM35Q9UPQ4 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
TRIM35Q9UPQ4 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
TRIM35Q9UPQ4 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
TRIM35Q9UPQ4 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
TRIM35Q9UPQ4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
TRIM35Q9UPQ4 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC30.24■■■□□ 2.43
TRIM35Q9UPQ4 TSPY9P-201ENST00000440215 945 ntBASIC30.24■■■□□ 2.43
TRIM35Q9UPQ4 TSPY11P-201ENST00000442607 1045 ntBASIC30.24■■■□□ 2.43
TRIM35Q9UPQ4 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC30.24■■■□□ 2.43
TRIM35Q9UPQ4 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
TRIM35Q9UPQ4 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC30.23■■■□□ 2.43
TRIM35Q9UPQ4 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
TRIM35Q9UPQ4 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 AL356441.2-201ENST00000443009 864 ntBASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 CD37-213ENST00000598095 1598 ntTSL 2 BASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 PREB-202ENST00000406567 1910 ntTSL 5 BASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
TRIM35Q9UPQ4 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
TRIM35Q9UPQ4 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC30.21■■■□□ 2.43
TRIM35Q9UPQ4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC30.21■■■□□ 2.43
TRIM35Q9UPQ4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
TRIM35Q9UPQ4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC30.21■■■□□ 2.43
TRIM35Q9UPQ4 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC30.2■■■□□ 2.43
TRIM35Q9UPQ4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC30.2■■■□□ 2.43
TRIM35Q9UPQ4 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
TRIM35Q9UPQ4 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC30.19■■■□□ 2.42
TRIM35Q9UPQ4 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
TRIM35Q9UPQ4 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
TRIM35Q9UPQ4 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
TRIM35Q9UPQ4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC30.19■■■□□ 2.42
TRIM35Q9UPQ4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC30.19■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms