Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CPNE1Q99829 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.1■■□□□ 1.29
CPNE1Q99829 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.1■■□□□ 1.29
CPNE1Q99829 MIR6765-201ENST00000614092 87 ntBASIC23.1■■□□□ 1.29
CPNE1Q99829 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.1■■□□□ 1.29
CPNE1Q99829 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC23.1■■□□□ 1.29
CPNE1Q99829 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CPNE1Q99829 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CPNE1Q99829 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.1■■□□□ 1.29
CPNE1Q99829 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.09■■□□□ 1.29
CPNE1Q99829 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
CPNE1Q99829 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.09■■□□□ 1.29
CPNE1Q99829 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CPNE1Q99829 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CPNE1Q99829 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CPNE1Q99829 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CPNE1Q99829 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
CPNE1Q99829 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.09■■□□□ 1.29
CPNE1Q99829 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CPNE1Q99829 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CPNE1Q99829 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC23.09■■□□□ 1.29
CPNE1Q99829 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC23.08■■□□□ 1.29
CPNE1Q99829 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CPNE1Q99829 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC23.08■■□□□ 1.29
CPNE1Q99829 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC23.08■■□□□ 1.29
CPNE1Q99829 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC23.08■■□□□ 1.29
CPNE1Q99829 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
CPNE1Q99829 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CPNE1Q99829 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CPNE1Q99829 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.08■■□□□ 1.29
CPNE1Q99829 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
CPNE1Q99829 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.28
CPNE1Q99829 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CPNE1Q99829 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CPNE1Q99829 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CPNE1Q99829 DUX4L9-201ENST00000449051 1259 ntBASIC23.07■■□□□ 1.28
CPNE1Q99829 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC23.07■■□□□ 1.28
CPNE1Q99829 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.07■■□□□ 1.28
CPNE1Q99829 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CPNE1Q99829 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CPNE1Q99829 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CPNE1Q99829 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CPNE1Q99829 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CPNE1Q99829 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
CPNE1Q99829 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC23.06■■□□□ 1.28
CPNE1Q99829 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CPNE1Q99829 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CPNE1Q99829 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
CPNE1Q99829 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CPNE1Q99829 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
CPNE1Q99829 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
CPNE1Q99829 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
CPNE1Q99829 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC23.04■■□□□ 1.28
CPNE1Q99829 AL161729.1-201ENST00000604104 1402 ntBASIC23.04■■□□□ 1.28
CPNE1Q99829 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CPNE1Q99829 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.03■■□□□ 1.28
CPNE1Q99829 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CPNE1Q99829 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CPNE1Q99829 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
CPNE1Q99829 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CPNE1Q99829 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
CPNE1Q99829 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC23.03■■□□□ 1.28
CPNE1Q99829 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CPNE1Q99829 RARRES2P2-201ENST00000394842 485 ntBASIC23.03■■□□□ 1.28
CPNE1Q99829 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.03■■□□□ 1.28
CPNE1Q99829 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.03■■□□□ 1.28
CPNE1Q99829 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CPNE1Q99829 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CPNE1Q99829 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CPNE1Q99829 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CPNE1Q99829 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.02■■□□□ 1.28
CPNE1Q99829 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CPNE1Q99829 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.02■■□□□ 1.28
CPNE1Q99829 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.02■■□□□ 1.28
CPNE1Q99829 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CPNE1Q99829 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.02■■□□□ 1.28
CPNE1Q99829 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CPNE1Q99829 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CPNE1Q99829 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CPNE1Q99829 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.01■■□□□ 1.27
CPNE1Q99829 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.01■■□□□ 1.27
CPNE1Q99829 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.01■■□□□ 1.27
CPNE1Q99829 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CPNE1Q99829 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC23.01■■□□□ 1.27
CPNE1Q99829 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.01■■□□□ 1.27
CPNE1Q99829 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CPNE1Q99829 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CPNE1Q99829 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CPNE1Q99829 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CPNE1Q99829 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23■■□□□ 1.27
CPNE1Q99829 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23■■□□□ 1.27
CPNE1Q99829 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
CPNE1Q99829 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CPNE1Q99829 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23■■□□□ 1.27
CPNE1Q99829 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
CPNE1Q99829 LONRF2P2-201ENST00000439212 571 ntBASIC23■■□□□ 1.27
CPNE1Q99829 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23■■□□□ 1.27
CPNE1Q99829 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CPNE1Q99829 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
CPNE1Q99829 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms