Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 AC004448.1-201ENST00000458332 883 ntBASIC23.11■■□□□ 1.29
LYSMD1Q96S90 SNX5-217ENST00000606557 1087 ntBASIC23.11■■□□□ 1.29
LYSMD1Q96S90 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LYSMD1Q96S90 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
LYSMD1Q96S90 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LYSMD1Q96S90 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 AC141586.4-201ENST00000624558 1573 ntBASIC23.1■■□□□ 1.29
LYSMD1Q96S90 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.1■■□□□ 1.29
LYSMD1Q96S90 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
LYSMD1Q96S90 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
LYSMD1Q96S90 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
LYSMD1Q96S90 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
LYSMD1Q96S90 CREM-229ENST00000474362 1030 ntTSL 2 BASIC23.09■■□□□ 1.29
LYSMD1Q96S90 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.09■■□□□ 1.29
LYSMD1Q96S90 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.09■■□□□ 1.29
LYSMD1Q96S90 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.08■■□□□ 1.29
LYSMD1Q96S90 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.08■■□□□ 1.29
LYSMD1Q96S90 LINC00543-201ENST00000567234 1845 ntBASIC23.08■■□□□ 1.29
LYSMD1Q96S90 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
LYSMD1Q96S90 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
LYSMD1Q96S90 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
LYSMD1Q96S90 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
LYSMD1Q96S90 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
LYSMD1Q96S90 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.08■■□□□ 1.29
LYSMD1Q96S90 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.08■■□□□ 1.29
LYSMD1Q96S90 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
LYSMD1Q96S90 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
LYSMD1Q96S90 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
LYSMD1Q96S90 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
LYSMD1Q96S90 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
LYSMD1Q96S90 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LYSMD1Q96S90 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23.07■■□□□ 1.28
LYSMD1Q96S90 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
LYSMD1Q96S90 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.07■■□□□ 1.28
LYSMD1Q96S90 AC135731.1-201ENST00000569415 2548 ntBASIC23.07■■□□□ 1.28
LYSMD1Q96S90 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
LYSMD1Q96S90 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
LYSMD1Q96S90 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.07■■□□□ 1.28
LYSMD1Q96S90 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.07■■□□□ 1.28
LYSMD1Q96S90 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.07■■□□□ 1.28
LYSMD1Q96S90 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
LYSMD1Q96S90 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
LYSMD1Q96S90 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
LYSMD1Q96S90 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.05■■□□□ 1.28
LYSMD1Q96S90 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
LYSMD1Q96S90 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
LYSMD1Q96S90 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
LYSMD1Q96S90 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.04■■□□□ 1.28
LYSMD1Q96S90 LINC01124-201ENST00000409786 2117 ntBASIC23.04■■□□□ 1.28
LYSMD1Q96S90 MIR6722-201ENST00000617286 78 ntBASIC23.04■■□□□ 1.28
LYSMD1Q96S90 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
LYSMD1Q96S90 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LYSMD1Q96S90 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LYSMD1Q96S90 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
LYSMD1Q96S90 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
LYSMD1Q96S90 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.03■■□□□ 1.28
LYSMD1Q96S90 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
LYSMD1Q96S90 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
LYSMD1Q96S90 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.03■■□□□ 1.28
LYSMD1Q96S90 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.03■■□□□ 1.28
LYSMD1Q96S90 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
LYSMD1Q96S90 PREB-202ENST00000406567 1910 ntTSL 5 BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms