Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC22.19■■□□□ 1.14
CNTNAP3BQ96NU0 NME4-202ENST00000382940 766 ntTSL 3 BASIC22.19■■□□□ 1.14
CNTNAP3BQ96NU0 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CNTNAP3BQ96NU0 RAP2CP1-201ENST00000605103 478 ntBASIC22.19■■□□□ 1.14
CNTNAP3BQ96NU0 AC011298.3-201ENST00000615796 283 ntBASIC22.19■■□□□ 1.14
CNTNAP3BQ96NU0 NME4-211ENST00000620944 1193 ntTSL 2 BASIC22.19■■□□□ 1.14
CNTNAP3BQ96NU0 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC22.19■■□□□ 1.14
CNTNAP3BQ96NU0 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
CNTNAP3BQ96NU0 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
CNTNAP3BQ96NU0 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CNTNAP3BQ96NU0 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CNTNAP3BQ96NU0 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CNTNAP3BQ96NU0 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CNTNAP3BQ96NU0 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CNTNAP3BQ96NU0 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CNTNAP3BQ96NU0 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CNTNAP3BQ96NU0 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.18■■□□□ 1.14
CNTNAP3BQ96NU0 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
CNTNAP3BQ96NU0 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.17■■□□□ 1.14
CNTNAP3BQ96NU0 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CNTNAP3BQ96NU0 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.17■■□□□ 1.14
CNTNAP3BQ96NU0 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CNTNAP3BQ96NU0 AL499627.2-201ENST00000606283 725 ntBASIC22.17■■□□□ 1.14
CNTNAP3BQ96NU0 AL109923.1-201ENST00000618799 583 ntBASIC22.17■■□□□ 1.14
CNTNAP3BQ96NU0 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC22.16■■□□□ 1.14
CNTNAP3BQ96NU0 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC22.16■■□□□ 1.14
CNTNAP3BQ96NU0 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC22.16■■□□□ 1.14
CNTNAP3BQ96NU0 MAP2K4P1-201ENST00000438453 1195 ntBASIC22.16■■□□□ 1.14
CNTNAP3BQ96NU0 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CNTNAP3BQ96NU0 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC22.16■■□□□ 1.14
CNTNAP3BQ96NU0 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.16■■□□□ 1.14
CNTNAP3BQ96NU0 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CNTNAP3BQ96NU0 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CNTNAP3BQ96NU0 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CNTNAP3BQ96NU0 AC123595.1-201ENST00000440769 1046 ntBASIC22.15■■□□□ 1.14
CNTNAP3BQ96NU0 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC22.15■■□□□ 1.14
CNTNAP3BQ96NU0 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.15■■□□□ 1.14
CNTNAP3BQ96NU0 PPP1R14BP3-201ENST00000509033 445 ntBASIC22.15■■□□□ 1.14
CNTNAP3BQ96NU0 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC22.15■■□□□ 1.14
CNTNAP3BQ96NU0 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CNTNAP3BQ96NU0 AC135731.1-201ENST00000569415 2548 ntBASIC22.15■■□□□ 1.14
CNTNAP3BQ96NU0 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC22.15■■□□□ 1.14
CNTNAP3BQ96NU0 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
CNTNAP3BQ96NU0 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC22.14■■□□□ 1.14
CNTNAP3BQ96NU0 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CNTNAP3BQ96NU0 CDCA4P2-201ENST00000441182 718 ntBASIC22.14■■□□□ 1.13
CNTNAP3BQ96NU0 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC22.14■■□□□ 1.13
CNTNAP3BQ96NU0 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.14■■□□□ 1.13
CNTNAP3BQ96NU0 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 AC026185.1-201ENST00000445748 174 ntBASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CNTNAP3BQ96NU0 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CNTNAP3BQ96NU0 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CNTNAP3BQ96NU0 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC22.12■■□□□ 1.13
CNTNAP3BQ96NU0 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC22.12■■□□□ 1.13
CNTNAP3BQ96NU0 AC233992.3-201ENST00000607491 485 ntBASIC22.12■■□□□ 1.13
CNTNAP3BQ96NU0 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CNTNAP3BQ96NU0 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
CNTNAP3BQ96NU0 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CNTNAP3BQ96NU0 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
CNTNAP3BQ96NU0 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CNTNAP3BQ96NU0 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC22.11■■□□□ 1.13
CNTNAP3BQ96NU0 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC22.11■■□□□ 1.13
CNTNAP3BQ96NU0 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC22.11■■□□□ 1.13
CNTNAP3BQ96NU0 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC22.11■■□□□ 1.13
CNTNAP3BQ96NU0 AL138724.1-201ENST00000606771 1088 ntBASIC22.11■■□□□ 1.13
CNTNAP3BQ96NU0 AC073111.5-205ENST00000641717 521 ntBASIC22.11■■□□□ 1.13
CNTNAP3BQ96NU0 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CNTNAP3BQ96NU0 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CNTNAP3BQ96NU0 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CNTNAP3BQ96NU0 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CNTNAP3BQ96NU0 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CNTNAP3BQ96NU0 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC22.1■■□□□ 1.13
CNTNAP3BQ96NU0 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC22.1■■□□□ 1.13
CNTNAP3BQ96NU0 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CNTNAP3BQ96NU0 CCDC92B-201ENST00000575506 885 ntBASIC22.1■■□□□ 1.13
CNTNAP3BQ96NU0 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC22.1■■□□□ 1.13
CNTNAP3BQ96NU0 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.1■■□□□ 1.13
CNTNAP3BQ96NU0 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CNTNAP3BQ96NU0 ST7-AS1-201ENST00000456775 1889 ntBASIC22.09■■□□□ 1.13
CNTNAP3BQ96NU0 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC22.09■■□□□ 1.13
CNTNAP3BQ96NU0 AC027612.3-201ENST00000413684 1047 ntBASIC22.09■■□□□ 1.13
CNTNAP3BQ96NU0 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC22.09■■□□□ 1.13
CNTNAP3BQ96NU0 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC22.09■■□□□ 1.13
CNTNAP3BQ96NU0 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
CNTNAP3BQ96NU0 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CNTNAP3BQ96NU0 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.08■■□□□ 1.13
CNTNAP3BQ96NU0 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms