Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
BEST3Q8N1M1 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
BEST3Q8N1M1 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
BEST3Q8N1M1 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
BEST3Q8N1M1 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
BEST3Q8N1M1 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.39■■□□□ 1.01
BEST3Q8N1M1 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.39■■□□□ 1.01
BEST3Q8N1M1 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.39■■□□□ 1.01
BEST3Q8N1M1 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.39■■□□□ 1.01
BEST3Q8N1M1 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.39■■□□□ 1.01
BEST3Q8N1M1 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
BEST3Q8N1M1 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
BEST3Q8N1M1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
BEST3Q8N1M1 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
BEST3Q8N1M1 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
BEST3Q8N1M1 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BEST3Q8N1M1 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BEST3Q8N1M1 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
BEST3Q8N1M1 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BEST3Q8N1M1 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BEST3Q8N1M1 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.38■■□□□ 1.01
BEST3Q8N1M1 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.38■■□□□ 1.01
BEST3Q8N1M1 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
BEST3Q8N1M1 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
BEST3Q8N1M1 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.37■■□□□ 1.01
BEST3Q8N1M1 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
BEST3Q8N1M1 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
BEST3Q8N1M1 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.37■■□□□ 1.01
BEST3Q8N1M1 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
BEST3Q8N1M1 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
BEST3Q8N1M1 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
BEST3Q8N1M1 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.37■■□□□ 1.01
BEST3Q8N1M1 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
BEST3Q8N1M1 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BEST3Q8N1M1 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BEST3Q8N1M1 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BEST3Q8N1M1 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
BEST3Q8N1M1 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.35■■□□□ 1.01
BEST3Q8N1M1 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
BEST3Q8N1M1 AL136116.3-201ENST00000402907 1138 ntBASIC21.35■■□□□ 1.01
BEST3Q8N1M1 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.35■■□□□ 1.01
BEST3Q8N1M1 MIR6722-201ENST00000617286 78 ntBASIC21.35■■□□□ 1.01
BEST3Q8N1M1 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BEST3Q8N1M1 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.34■■□□□ 1.01
BEST3Q8N1M1 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.34■■□□□ 1.01
BEST3Q8N1M1 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.34■■□□□ 1.01
BEST3Q8N1M1 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
BEST3Q8N1M1 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
BEST3Q8N1M1 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.34■■□□□ 1.01
BEST3Q8N1M1 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
BEST3Q8N1M1 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.33■■□□□ 1.01
BEST3Q8N1M1 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
BEST3Q8N1M1 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.33■■□□□ 1.01
BEST3Q8N1M1 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.33■■□□□ 1.01
BEST3Q8N1M1 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
BEST3Q8N1M1 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.33■■□□□ 1
BEST3Q8N1M1 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.33■■□□□ 1
BEST3Q8N1M1 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BEST3Q8N1M1 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BEST3Q8N1M1 AC019069.1-201ENST00000610008 1333 ntBASIC21.32■■□□□ 1
BEST3Q8N1M1 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.32■■□□□ 1
BEST3Q8N1M1 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.32■■□□□ 1
BEST3Q8N1M1 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.32■■□□□ 1
BEST3Q8N1M1 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.32■■□□□ 1
BEST3Q8N1M1 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.32■■□□□ 1
BEST3Q8N1M1 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.32■■□□□ 1
BEST3Q8N1M1 MIR6089-201ENST00000616698 64 ntBASIC21.32■■□□□ 1
BEST3Q8N1M1 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.32■■□□□ 1
BEST3Q8N1M1 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
BEST3Q8N1M1 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.32■■□□□ 1
BEST3Q8N1M1 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.32■■□□□ 1
BEST3Q8N1M1 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.31■■□□□ 1
BEST3Q8N1M1 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.31■■□□□ 1
BEST3Q8N1M1 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.31■■□□□ 1
BEST3Q8N1M1 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
BEST3Q8N1M1 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BEST3Q8N1M1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BEST3Q8N1M1 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.31■■□□□ 1
BEST3Q8N1M1 MIR4466-201ENST00000606121 54 ntBASIC21.31■■□□□ 1
BEST3Q8N1M1 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
BEST3Q8N1M1 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BEST3Q8N1M1 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.31■■□□□ 1
BEST3Q8N1M1 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BEST3Q8N1M1 AC004448.1-201ENST00000458332 883 ntBASIC21.3■■□□□ 1
BEST3Q8N1M1 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms