Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC28AQ8IWP9 CAHM-201ENST00000604200 896 ntBASIC19.21■□□□□ 0.67
CCDC28AQ8IWP9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28AQ8IWP9 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC28AQ8IWP9 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC28AQ8IWP9 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28AQ8IWP9 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28AQ8IWP9 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28AQ8IWP9 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28AQ8IWP9 DENR-202ENST00000455982 1052 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC28AQ8IWP9 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28AQ8IWP9 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28AQ8IWP9 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28AQ8IWP9 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28AQ8IWP9 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28AQ8IWP9 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28AQ8IWP9 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28AQ8IWP9 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28AQ8IWP9 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28AQ8IWP9 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC28AQ8IWP9 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC28AQ8IWP9 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28AQ8IWP9 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CCDC28AQ8IWP9 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28AQ8IWP9 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28AQ8IWP9 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC28AQ8IWP9 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC28AQ8IWP9 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28AQ8IWP9 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28AQ8IWP9 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC28AQ8IWP9 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC28AQ8IWP9 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CCDC28AQ8IWP9 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28AQ8IWP9 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC28AQ8IWP9 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28AQ8IWP9 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28AQ8IWP9 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC28AQ8IWP9 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
CCDC28AQ8IWP9 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC28AQ8IWP9 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CCDC28AQ8IWP9 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28AQ8IWP9 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC28AQ8IWP9 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28AQ8IWP9 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC28AQ8IWP9 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC28AQ8IWP9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28AQ8IWP9 AC141586.4-201ENST00000624558 1573 ntBASIC19.17■□□□□ 0.66
CCDC28AQ8IWP9 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC28AQ8IWP9 AP003733.4-201ENST00000623785 1697 ntBASIC19.17■□□□□ 0.66
CCDC28AQ8IWP9 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CCDC28AQ8IWP9 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28AQ8IWP9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28AQ8IWP9 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28AQ8IWP9 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC19.16■□□□□ 0.66
CCDC28AQ8IWP9 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC28AQ8IWP9 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28AQ8IWP9 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28AQ8IWP9 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC28AQ8IWP9 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28AQ8IWP9 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28AQ8IWP9 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28AQ8IWP9 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 AC007952.6-201ENST00000573168 2673 ntBASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 AC003957.1-201ENST00000625108 2673 ntBASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 MEST-211ENST00000437945 1455 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28AQ8IWP9 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.14■□□□□ 0.66
CCDC28AQ8IWP9 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC28AQ8IWP9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
CCDC28AQ8IWP9 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28AQ8IWP9 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28AQ8IWP9 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CCDC28AQ8IWP9 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28AQ8IWP9 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28AQ8IWP9 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28AQ8IWP9 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CCDC28AQ8IWP9 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CCDC28AQ8IWP9 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms