Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
USP54Q70EL1 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC31.35■■■□□ 2.61
USP54Q70EL1 AP001330.3-201ENST00000520123 633 ntBASIC31.35■■■□□ 2.61
USP54Q70EL1 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC31.35■■■□□ 2.61
USP54Q70EL1 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC31.34■■■□□ 2.61
USP54Q70EL1 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
USP54Q70EL1 AC005703.6-201ENST00000623265 1329 ntBASIC31.34■■■□□ 2.61
USP54Q70EL1 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC31.34■■■□□ 2.61
USP54Q70EL1 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC31.34■■■□□ 2.61
USP54Q70EL1 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
USP54Q70EL1 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
USP54Q70EL1 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
USP54Q70EL1 EDA-201ENST00000338901 1233 ntBASIC31.33■■■□□ 2.61
USP54Q70EL1 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC31.33■■■□□ 2.61
USP54Q70EL1 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
USP54Q70EL1 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
USP54Q70EL1 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC31.33■■■□□ 2.61
USP54Q70EL1 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
USP54Q70EL1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.61
USP54Q70EL1 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP54Q70EL1 AC026271.2-201ENST00000428091 497 ntBASIC31.32■■■□□ 2.6
USP54Q70EL1 SRD5A1P1-201ENST00000442297 786 ntBASIC31.32■■■□□ 2.6
USP54Q70EL1 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP54Q70EL1 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
USP54Q70EL1 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
USP54Q70EL1 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.6
USP54Q70EL1 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC31.32■■■□□ 2.6
USP54Q70EL1 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC31.31■■■□□ 2.6
USP54Q70EL1 PBX2P1-201ENST00000493219 1291 ntBASIC31.31■■■□□ 2.6
USP54Q70EL1 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
USP54Q70EL1 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC31.31■■■□□ 2.6
USP54Q70EL1 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC31.3■■■□□ 2.6
USP54Q70EL1 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP54Q70EL1 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP54Q70EL1 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
USP54Q70EL1 MIR939-201ENST00000401314 82 ntBASIC31.29■■■□□ 2.6
USP54Q70EL1 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
USP54Q70EL1 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
USP54Q70EL1 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
USP54Q70EL1 PTMA-205ENST00000410064 814 ntTSL 2 BASIC31.29■■■□□ 2.6
USP54Q70EL1 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC31.29■■■□□ 2.6
USP54Q70EL1 CD37-213ENST00000598095 1598 ntTSL 2 BASIC31.28■■■□□ 2.6
USP54Q70EL1 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
USP54Q70EL1 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC31.28■■■□□ 2.6
USP54Q70EL1 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC31.28■■■□□ 2.6
USP54Q70EL1 AC142381.2-201ENST00000566120 298 ntBASIC31.28■■■□□ 2.6
USP54Q70EL1 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
USP54Q70EL1 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
USP54Q70EL1 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC31.27■■■□□ 2.6
USP54Q70EL1 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
USP54Q70EL1 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
USP54Q70EL1 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
USP54Q70EL1 STK32C-205ENST00000456004 607 ntTSL 2 BASIC31.27■■■□□ 2.6
USP54Q70EL1 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC31.27■■■□□ 2.6
USP54Q70EL1 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
USP54Q70EL1 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
USP54Q70EL1 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
USP54Q70EL1 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
USP54Q70EL1 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC31.26■■■□□ 2.6
USP54Q70EL1 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC31.26■■■□□ 2.6
USP54Q70EL1 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC31.26■■■□□ 2.6
USP54Q70EL1 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC31.26■■■□□ 2.6
USP54Q70EL1 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
USP54Q70EL1 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
USP54Q70EL1 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC31.25■■■□□ 2.59
USP54Q70EL1 LGR4-203ENST00000480977 492 ntTSL 2 BASIC31.25■■■□□ 2.59
USP54Q70EL1 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
USP54Q70EL1 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC31.25■■■□□ 2.59
USP54Q70EL1 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
USP54Q70EL1 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
USP54Q70EL1 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
USP54Q70EL1 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
USP54Q70EL1 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC31.25■■■□□ 2.59
USP54Q70EL1 SLC6A10P-202ENST00000431994 2058 ntBASIC31.25■■■□□ 2.59
USP54Q70EL1 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC31.25■■■□□ 2.59
USP54Q70EL1 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
USP54Q70EL1 PTCHD3P2-201ENST00000424937 1205 ntBASIC31.25■■■□□ 2.59
USP54Q70EL1 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC31.25■■■□□ 2.59
USP54Q70EL1 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
USP54Q70EL1 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
USP54Q70EL1 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC31.24■■■□□ 2.59
USP54Q70EL1 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
USP54Q70EL1 C17orf82-201ENST00000623772 1530 ntBASIC31.23■■■□□ 2.59
USP54Q70EL1 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
USP54Q70EL1 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
USP54Q70EL1 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC31.23■■■□□ 2.59
USP54Q70EL1 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
USP54Q70EL1 AF213884.3-201ENST00000563833 479 ntBASIC31.23■■■□□ 2.59
USP54Q70EL1 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC31.23■■■□□ 2.59
USP54Q70EL1 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
USP54Q70EL1 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
USP54Q70EL1 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC31.22■■■□□ 2.59
USP54Q70EL1 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC31.22■■■□□ 2.59
USP54Q70EL1 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
USP54Q70EL1 DUX4L19-201ENST00000557448 1267 ntBASIC31.22■■■□□ 2.59
USP54Q70EL1 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC31.21■■■□□ 2.59
USP54Q70EL1 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC31.21■■■□□ 2.59
USP54Q70EL1 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC31.21■■■□□ 2.59
USP54Q70EL1 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
USP54Q70EL1 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms