Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.86■□□□□ 0.77
USF3Q68DE3 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USF3Q68DE3 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USF3Q68DE3 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USF3Q68DE3 AC097639.1-201ENST00000565519 1891 ntBASIC19.86■□□□□ 0.77
USF3Q68DE3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USF3Q68DE3 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USF3Q68DE3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USF3Q68DE3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USF3Q68DE3 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.85■□□□□ 0.77
USF3Q68DE3 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.85■□□□□ 0.77
USF3Q68DE3 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.85■□□□□ 0.77
USF3Q68DE3 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.85■□□□□ 0.77
USF3Q68DE3 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USF3Q68DE3 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USF3Q68DE3 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USF3Q68DE3 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.84■□□□□ 0.77
USF3Q68DE3 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USF3Q68DE3 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
USF3Q68DE3 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.84■□□□□ 0.77
USF3Q68DE3 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.84■□□□□ 0.77
USF3Q68DE3 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USF3Q68DE3 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.84■□□□□ 0.77
USF3Q68DE3 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USF3Q68DE3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USF3Q68DE3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
USF3Q68DE3 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.83■□□□□ 0.77
USF3Q68DE3 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USF3Q68DE3 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.83■□□□□ 0.77
USF3Q68DE3 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USF3Q68DE3 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.83■□□□□ 0.77
USF3Q68DE3 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USF3Q68DE3 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USF3Q68DE3 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USF3Q68DE3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USF3Q68DE3 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USF3Q68DE3 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
USF3Q68DE3 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.83■□□□□ 0.76
USF3Q68DE3 AC106739.1-201ENST00000617035 715 ntBASIC19.83■□□□□ 0.76
USF3Q68DE3 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
USF3Q68DE3 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
USF3Q68DE3 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USF3Q68DE3 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.82■□□□□ 0.76
USF3Q68DE3 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USF3Q68DE3 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
USF3Q68DE3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.82■□□□□ 0.76
USF3Q68DE3 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USF3Q68DE3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USF3Q68DE3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USF3Q68DE3 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USF3Q68DE3 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USF3Q68DE3 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USF3Q68DE3 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USF3Q68DE3 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.81■□□□□ 0.76
USF3Q68DE3 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
USF3Q68DE3 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.8■□□□□ 0.76
USF3Q68DE3 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.8■□□□□ 0.76
USF3Q68DE3 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USF3Q68DE3 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.8■□□□□ 0.76
USF3Q68DE3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.8■□□□□ 0.76
USF3Q68DE3 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USF3Q68DE3 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.8■□□□□ 0.76
USF3Q68DE3 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
USF3Q68DE3 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.8■□□□□ 0.76
USF3Q68DE3 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
USF3Q68DE3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USF3Q68DE3 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USF3Q68DE3 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.79■□□□□ 0.76
USF3Q68DE3 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USF3Q68DE3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.79■□□□□ 0.76
USF3Q68DE3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
USF3Q68DE3 AC090877.2-201ENST00000558441 1738 ntBASIC19.79■□□□□ 0.76
USF3Q68DE3 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
USF3Q68DE3 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USF3Q68DE3 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USF3Q68DE3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USF3Q68DE3 AC026271.2-201ENST00000428091 497 ntBASIC19.79■□□□□ 0.76
USF3Q68DE3 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
USF3Q68DE3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
USF3Q68DE3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.78■□□□□ 0.76
USF3Q68DE3 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.78■□□□□ 0.76
USF3Q68DE3 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
USF3Q68DE3 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USF3Q68DE3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
USF3Q68DE3 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.78■□□□□ 0.76
USF3Q68DE3 AL031432.3-201ENST00000607698 485 ntBASIC19.78■□□□□ 0.76
USF3Q68DE3 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
USF3Q68DE3 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USF3Q68DE3 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
USF3Q68DE3 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USF3Q68DE3 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
USF3Q68DE3 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
USF3Q68DE3 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USF3Q68DE3 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USF3Q68DE3 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USF3Q68DE3 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USF3Q68DE3 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
USF3Q68DE3 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.76■□□□□ 0.75
USF3Q68DE3 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USF3Q68DE3 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms