Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.68■□□□□ 0.9
H3F3AP84243 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
H3F3AP84243 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.68■□□□□ 0.9
H3F3AP84243 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
H3F3AP84243 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
H3F3AP84243 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
H3F3AP84243 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
H3F3AP84243 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
H3F3AP84243 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
H3F3AP84243 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
H3F3AP84243 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
H3F3AP84243 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.67■□□□□ 0.9
H3F3AP84243 Z92544.1-202ENST00000571933 1220 ntBASIC20.67■□□□□ 0.9
H3F3AP84243 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
H3F3AP84243 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
H3F3AP84243 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
H3F3AP84243 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
H3F3AP84243 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
H3F3AP84243 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
H3F3AP84243 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
H3F3AP84243 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
H3F3AP84243 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
H3F3AP84243 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
H3F3AP84243 AC021242.3-201ENST00000607598 1377 ntBASIC20.66■□□□□ 0.9
H3F3AP84243 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.66■□□□□ 0.9
H3F3AP84243 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.66■□□□□ 0.9
H3F3AP84243 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
H3F3AP84243 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
H3F3AP84243 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
H3F3AP84243 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
H3F3AP84243 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
H3F3AP84243 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
H3F3AP84243 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.65■□□□□ 0.9
H3F3AP84243 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
H3F3AP84243 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.65■□□□□ 0.9
H3F3AP84243 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
H3F3AP84243 AL161729.1-201ENST00000604104 1402 ntBASIC20.65■□□□□ 0.9
H3F3AP84243 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
H3F3AP84243 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
H3F3AP84243 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
H3F3AP84243 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
H3F3AP84243 AC131274.2-201ENST00000580697 1507 ntBASIC20.64■□□□□ 0.9
H3F3AP84243 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
H3F3AP84243 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
H3F3AP84243 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.64■□□□□ 0.89
H3F3AP84243 BX664725.1-201ENST00000438252 379 ntBASIC20.64■□□□□ 0.89
H3F3AP84243 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
H3F3AP84243 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.64■□□□□ 0.89
H3F3AP84243 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.64■□□□□ 0.89
H3F3AP84243 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
H3F3AP84243 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
H3F3AP84243 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.63■□□□□ 0.89
H3F3AP84243 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
H3F3AP84243 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.63■□□□□ 0.89
H3F3AP84243 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
H3F3AP84243 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
H3F3AP84243 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
H3F3AP84243 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
H3F3AP84243 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
H3F3AP84243 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
H3F3AP84243 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.62■□□□□ 0.89
H3F3AP84243 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
H3F3AP84243 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
H3F3AP84243 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.62■□□□□ 0.89
H3F3AP84243 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
H3F3AP84243 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.62■□□□□ 0.89
H3F3AP84243 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.62■□□□□ 0.89
H3F3AP84243 AL035685.1-201ENST00000636663 812 ntBASIC20.62■□□□□ 0.89
H3F3AP84243 AL022069.1-201ENST00000568025 1636 ntBASIC20.62■□□□□ 0.89
H3F3AP84243 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.62■□□□□ 0.89
H3F3AP84243 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
H3F3AP84243 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
H3F3AP84243 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
H3F3AP84243 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
H3F3AP84243 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
H3F3AP84243 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.61■□□□□ 0.89
H3F3AP84243 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.61■□□□□ 0.89
H3F3AP84243 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
H3F3AP84243 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
H3F3AP84243 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.61■□□□□ 0.89
H3F3AP84243 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
H3F3AP84243 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
H3F3AP84243 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
H3F3AP84243 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
H3F3AP84243 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.6■□□□□ 0.89
H3F3AP84243 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.6■□□□□ 0.89
H3F3AP84243 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.6■□□□□ 0.89
H3F3AP84243 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.6■□□□□ 0.89
H3F3AP84243 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
H3F3AP84243 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.6■□□□□ 0.89
H3F3AP84243 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.59■□□□□ 0.89
H3F3AP84243 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
H3F3AP84243 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.59■□□□□ 0.89
H3F3AP84243 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.59■□□□□ 0.89
H3F3AP84243 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
H3F3AP84243 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.59■□□□□ 0.89
H3F3AP84243 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
H3F3AP84243 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
H3F3AP84243 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
H3F3AP84243 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms