Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
HTTP42858 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
HTTP42858 SSSCA1-AS1-201ENST00000567594 614 ntBASIC26.46■■□□□ 1.83
HTTP42858 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
HTTP42858 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
HTTP42858 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.46■■□□□ 1.83
HTTP42858 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC26.45■■□□□ 1.82
HTTP42858 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
HTTP42858 AC142472.1-201ENST00000612013 1741 ntBASIC26.45■■□□□ 1.82
HTTP42858 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
HTTP42858 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC26.45■■□□□ 1.82
HTTP42858 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC26.45■■□□□ 1.82
HTTP42858 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC26.43■■□□□ 1.82
HTTP42858 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
HTTP42858 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC26.43■■□□□ 1.82
HTTP42858 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
HTTP42858 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
HTTP42858 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC26.43■■□□□ 1.82
HTTP42858 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC26.43■■□□□ 1.82
HTTP42858 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC26.43■■□□□ 1.82
HTTP42858 EMC9-206ENST00000560403 872 ntTSL 2 BASIC26.43■■□□□ 1.82
HTTP42858 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
HTTP42858 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC26.43■■□□□ 1.82
HTTP42858 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
HTTP42858 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
HTTP42858 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
HTTP42858 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
HTTP42858 AC090877.2-201ENST00000558441 1738 ntBASIC26.42■■□□□ 1.82
HTTP42858 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
HTTP42858 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC26.41■■□□□ 1.82
HTTP42858 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
HTTP42858 AL138724.1-201ENST00000606771 1088 ntBASIC26.41■■□□□ 1.82
HTTP42858 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
HTTP42858 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
HTTP42858 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
HTTP42858 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
HTTP42858 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
HTTP42858 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
HTTP42858 AP004609.3-201ENST00000610705 1884 ntBASIC26.41■■□□□ 1.82
HTTP42858 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC26.41■■□□□ 1.82
HTTP42858 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC26.41■■□□□ 1.82
HTTP42858 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.4■■□□□ 1.82
HTTP42858 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
HTTP42858 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC26.4■■□□□ 1.82
HTTP42858 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
HTTP42858 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.4■■□□□ 1.82
HTTP42858 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
HTTP42858 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC26.4■■□□□ 1.82
HTTP42858 RAB43-208ENST00000615093 783 ntTSL 5 BASIC26.4■■□□□ 1.82
HTTP42858 AC136469.2-201ENST00000623944 1028 ntBASIC26.4■■□□□ 1.82
HTTP42858 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
HTTP42858 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
HTTP42858 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
HTTP42858 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC26.39■■□□□ 1.82
HTTP42858 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
HTTP42858 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
HTTP42858 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC26.39■■□□□ 1.81
HTTP42858 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC26.39■■□□□ 1.81
HTTP42858 AC233992.3-201ENST00000607491 485 ntBASIC26.39■■□□□ 1.81
HTTP42858 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
HTTP42858 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
HTTP42858 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
HTTP42858 AC027612.3-201ENST00000413684 1047 ntBASIC26.38■■□□□ 1.81
HTTP42858 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC26.38■■□□□ 1.81
HTTP42858 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC26.38■■□□□ 1.81
HTTP42858 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC26.38■■□□□ 1.81
HTTP42858 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
HTTP42858 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC26.37■■□□□ 1.81
HTTP42858 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.37■■□□□ 1.81
HTTP42858 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
HTTP42858 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC26.37■■□□□ 1.81
HTTP42858 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC26.36■■□□□ 1.81
HTTP42858 C17orf82-201ENST00000623772 1530 ntBASIC26.36■■□□□ 1.81
HTTP42858 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC26.36■■□□□ 1.81
HTTP42858 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
HTTP42858 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
HTTP42858 AC005703.6-201ENST00000623265 1329 ntBASIC26.36■■□□□ 1.81
HTTP42858 ME3-201ENST00000323418 1068 ntTSL 5 BASIC26.35■■□□□ 1.81
HTTP42858 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC26.35■■□□□ 1.81
HTTP42858 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC26.35■■□□□ 1.81
HTTP42858 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HTTP42858 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
HTTP42858 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC26.35■■□□□ 1.81
HTTP42858 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HTTP42858 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HTTP42858 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
HTTP42858 AC099791.2-201ENST00000605725 427 ntBASIC26.34■■□□□ 1.81
HTTP42858 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC26.34■■□□□ 1.81
HTTP42858 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
HTTP42858 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC26.34■■□□□ 1.81
HTTP42858 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
HTTP42858 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
HTTP42858 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
HTTP42858 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HTTP42858 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
HTTP42858 VPS53-216ENST00000574029 585 ntTSL 4 BASIC26.33■■□□□ 1.81
HTTP42858 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC26.33■■□□□ 1.81
HTTP42858 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
HTTP42858 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HTTP42858 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.33■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms