Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
HNF4AP41235 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.36■■□□□ 1.17
HNF4AP41235 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
HNF4AP41235 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HNF4AP41235 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HNF4AP41235 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HNF4AP41235 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HNF4AP41235 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HNF4AP41235 YBX1P4-201ENST00000392794 808 ntBASIC22.35■■□□□ 1.17
HNF4AP41235 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
HNF4AP41235 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.34■■□□□ 1.17
HNF4AP41235 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HNF4AP41235 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC22.34■■□□□ 1.17
HNF4AP41235 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.34■■□□□ 1.17
HNF4AP41235 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC22.33■■□□□ 1.17
HNF4AP41235 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
HNF4AP41235 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
HNF4AP41235 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.33■■□□□ 1.17
HNF4AP41235 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.33■■□□□ 1.17
HNF4AP41235 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HNF4AP41235 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
HNF4AP41235 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.33■■□□□ 1.17
HNF4AP41235 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC22.33■■□□□ 1.16
HNF4AP41235 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
HNF4AP41235 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
HNF4AP41235 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.32■■□□□ 1.16
HNF4AP41235 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC22.32■■□□□ 1.16
HNF4AP41235 AC004812.2-201ENST00000611079 2094 ntBASIC22.32■■□□□ 1.16
HNF4AP41235 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
HNF4AP41235 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC22.32■■□□□ 1.16
HNF4AP41235 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HNF4AP41235 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
HNF4AP41235 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
HNF4AP41235 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.31■■□□□ 1.16
HNF4AP41235 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.31■■□□□ 1.16
HNF4AP41235 MIR4508-201ENST00000584178 70 ntBASIC22.31■■□□□ 1.16
HNF4AP41235 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
HNF4AP41235 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HNF4AP41235 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.31■■□□□ 1.16
HNF4AP41235 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.31■■□□□ 1.16
HNF4AP41235 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
HNF4AP41235 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.3■■□□□ 1.16
HNF4AP41235 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
HNF4AP41235 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HNF4AP41235 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
HNF4AP41235 RARRES2P1-201ENST00000474487 481 ntBASIC22.3■■□□□ 1.16
HNF4AP41235 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.3■■□□□ 1.16
HNF4AP41235 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HNF4AP41235 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HNF4AP41235 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HNF4AP41235 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC22.29■■□□□ 1.16
HNF4AP41235 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.29■■□□□ 1.16
HNF4AP41235 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
HNF4AP41235 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.29■■□□□ 1.16
HNF4AP41235 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.29■■□□□ 1.16
HNF4AP41235 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
HNF4AP41235 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
HNF4AP41235 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
HNF4AP41235 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HNF4AP41235 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
HNF4AP41235 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HNF4AP41235 AC120024.1-201ENST00000562672 995 ntBASIC22.28■■□□□ 1.16
HNF4AP41235 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HNF4AP41235 AL161729.1-201ENST00000604104 1402 ntBASIC22.28■■□□□ 1.16
HNF4AP41235 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HNF4AP41235 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HNF4AP41235 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.28■■□□□ 1.16
HNF4AP41235 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HNF4AP41235 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
HNF4AP41235 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
HNF4AP41235 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC22.27■■□□□ 1.16
HNF4AP41235 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
HNF4AP41235 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HNF4AP41235 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HNF4AP41235 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HNF4AP41235 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
HNF4AP41235 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HNF4AP41235 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HNF4AP41235 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.27■■□□□ 1.16
HNF4AP41235 AC103724.3-201ENST00000564481 992 ntBASIC22.27■■□□□ 1.16
HNF4AP41235 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
HNF4AP41235 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HNF4AP41235 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
HNF4AP41235 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
HNF4AP41235 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HNF4AP41235 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HNF4AP41235 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HNF4AP41235 THA1P-201ENST00000590384 1145 ntBASIC22.26■■□□□ 1.15
HNF4AP41235 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.26■■□□□ 1.15
HNF4AP41235 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
HNF4AP41235 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC22.26■■□□□ 1.15
HNF4AP41235 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
HNF4AP41235 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HNF4AP41235 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.25■■□□□ 1.15
HNF4AP41235 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HNF4AP41235 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC22.25■■□□□ 1.15
HNF4AP41235 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.25■■□□□ 1.15
HNF4AP41235 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.25■■□□□ 1.15
HNF4AP41235 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HNF4AP41235 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms