Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMS4P0CW20 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMS4P0CW20 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMS4P0CW20 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMS4P0CW20 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.56■□□□□ 0.88
LIMS4P0CW20 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
LIMS4P0CW20 AC092296.2-201ENST00000589470 999 ntBASIC20.56■□□□□ 0.88
LIMS4P0CW20 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMS4P0CW20 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMS4P0CW20 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMS4P0CW20 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMS4P0CW20 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMS4P0CW20 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMS4P0CW20 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.55■□□□□ 0.88
LIMS4P0CW20 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.55■□□□□ 0.88
LIMS4P0CW20 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.55■□□□□ 0.88
LIMS4P0CW20 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMS4P0CW20 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMS4P0CW20 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMS4P0CW20 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMS4P0CW20 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMS4P0CW20 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMS4P0CW20 EP400NL-214ENST00000641289 2402 ntBASIC20.55■□□□□ 0.88
LIMS4P0CW20 ANOS2P-203ENST00000472227 1816 ntBASIC20.55■□□□□ 0.88
LIMS4P0CW20 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
LIMS4P0CW20 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
LIMS4P0CW20 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMS4P0CW20 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMS4P0CW20 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIMS4P0CW20 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
LIMS4P0CW20 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIMS4P0CW20 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
LIMS4P0CW20 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMS4P0CW20 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMS4P0CW20 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMS4P0CW20 RP9P-202ENST00000450133 1212 ntBASIC20.53■□□□□ 0.88
LIMS4P0CW20 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMS4P0CW20 AC016575.1-201ENST00000607026 382 ntBASIC20.53■□□□□ 0.88
LIMS4P0CW20 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMS4P0CW20 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMS4P0CW20 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMS4P0CW20 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMS4P0CW20 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMS4P0CW20 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMS4P0CW20 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMS4P0CW20 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.52■□□□□ 0.88
LIMS4P0CW20 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.52■□□□□ 0.88
LIMS4P0CW20 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.52■□□□□ 0.88
LIMS4P0CW20 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMS4P0CW20 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMS4P0CW20 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
LIMS4P0CW20 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMS4P0CW20 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMS4P0CW20 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.52■□□□□ 0.88
LIMS4P0CW20 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
LIMS4P0CW20 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.87
LIMS4P0CW20 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
LIMS4P0CW20 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.52■□□□□ 0.87
LIMS4P0CW20 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.52■□□□□ 0.87
LIMS4P0CW20 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMS4P0CW20 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.51■□□□□ 0.87
LIMS4P0CW20 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
LIMS4P0CW20 AC093536.1-201ENST00000569153 554 ntBASIC20.51■□□□□ 0.87
LIMS4P0CW20 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC20.51■□□□□ 0.87
LIMS4P0CW20 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIMS4P0CW20 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMS4P0CW20 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMS4P0CW20 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.51■□□□□ 0.87
LIMS4P0CW20 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMS4P0CW20 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMS4P0CW20 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIMS4P0CW20 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LIMS4P0CW20 DUSP8P3-201ENST00000399571 1760 ntBASIC20.5■□□□□ 0.87
LIMS4P0CW20 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.5■□□□□ 0.87
LIMS4P0CW20 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
LIMS4P0CW20 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.5■□□□□ 0.87
LIMS4P0CW20 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.5■□□□□ 0.87
LIMS4P0CW20 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMS4P0CW20 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.5■□□□□ 0.87
LIMS4P0CW20 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMS4P0CW20 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LIMS4P0CW20 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LIMS4P0CW20 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMS4P0CW20 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMS4P0CW20 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMS4P0CW20 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMS4P0CW20 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.49■□□□□ 0.87
LIMS4P0CW20 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.49■□□□□ 0.87
LIMS4P0CW20 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.49■□□□□ 0.87
LIMS4P0CW20 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMS4P0CW20 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMS4P0CW20 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.49■□□□□ 0.87
LIMS4P0CW20 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMS4P0CW20 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMS4P0CW20 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMS4P0CW20 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
LIMS4P0CW20 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIMS4P0CW20 AC092068.2-201ENST00000590491 1708 ntBASIC20.48■□□□□ 0.87
LIMS4P0CW20 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LIMS4P0CW20 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms