Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL1P09341 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL1P09341 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL1P09341 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CXCL1P09341 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL1P09341 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
CXCL1P09341 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CXCL1P09341 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL1P09341 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.87■□□□□ 0.45
CXCL1P09341 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL1P09341 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL1P09341 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL1P09341 AP006261.1-201ENST00000584783 668 ntBASIC17.87■□□□□ 0.45
CXCL1P09341 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL1P09341 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL1P09341 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC17.87■□□□□ 0.45
CXCL1P09341 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL1P09341 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CXCL1P09341 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CXCL1P09341 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL1P09341 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC17.86■□□□□ 0.45
CXCL1P09341 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC17.86■□□□□ 0.45
CXCL1P09341 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL1P09341 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL1P09341 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL1P09341 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL1P09341 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL1P09341 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
CXCL1P09341 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL1P09341 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL1P09341 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL1P09341 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC17.85■□□□□ 0.45
CXCL1P09341 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CXCL1P09341 AC092667.1-201ENST00000434301 2586 ntBASIC17.85■□□□□ 0.45
CXCL1P09341 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC17.85■□□□□ 0.45
CXCL1P09341 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CXCL1P09341 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CXCL1P09341 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.85■□□□□ 0.45
CXCL1P09341 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL1P09341 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.85■□□□□ 0.45
CXCL1P09341 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL1P09341 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL1P09341 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.84■□□□□ 0.45
CXCL1P09341 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL1P09341 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC17.84■□□□□ 0.45
CXCL1P09341 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL1P09341 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL1P09341 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC17.84■□□□□ 0.45
CXCL1P09341 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL1P09341 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL1P09341 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
CXCL1P09341 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CXCL1P09341 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL1P09341 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL1P09341 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CXCL1P09341 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.83■□□□□ 0.45
CXCL1P09341 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC17.83■□□□□ 0.45
CXCL1P09341 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
CXCL1P09341 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.83■□□□□ 0.45
CXCL1P09341 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC17.83■□□□□ 0.44
CXCL1P09341 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CXCL1P09341 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC17.83■□□□□ 0.44
CXCL1P09341 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CXCL1P09341 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CXCL1P09341 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL1P09341 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL1P09341 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC17.82■□□□□ 0.44
CXCL1P09341 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL1P09341 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC17.82■□□□□ 0.44
CXCL1P09341 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CXCL1P09341 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.82■□□□□ 0.44
CXCL1P09341 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL1P09341 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL1P09341 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CXCL1P09341 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL1P09341 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC17.81■□□□□ 0.44
CXCL1P09341 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL1P09341 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL1P09341 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC17.81■□□□□ 0.44
CXCL1P09341 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL1P09341 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.81■□□□□ 0.44
CXCL1P09341 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
CXCL1P09341 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CXCL1P09341 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL1P09341 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL1P09341 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL1P09341 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL1P09341 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL1P09341 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL1P09341 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL1P09341 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL1P09341 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL1P09341 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC17.8■□□□□ 0.44
CXCL1P09341 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL1P09341 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.8■□□□□ 0.44
CXCL1P09341 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL1P09341 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CXCL1P09341 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL1P09341 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CXCL1P09341 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms