Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
LDB3O75112 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LDB3O75112 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LDB3O75112 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.74■■□□□ 1.07
LDB3O75112 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LDB3O75112 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LDB3O75112 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
LDB3O75112 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.74■■□□□ 1.07
LDB3O75112 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LDB3O75112 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
LDB3O75112 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.74■■□□□ 1.07
LDB3O75112 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LDB3O75112 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.73■■□□□ 1.07
LDB3O75112 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LDB3O75112 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LDB3O75112 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
LDB3O75112 AC239859.2-201ENST00000444165 318 ntBASIC21.73■■□□□ 1.07
LDB3O75112 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.73■■□□□ 1.07
LDB3O75112 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.73■■□□□ 1.07
LDB3O75112 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.73■■□□□ 1.07
LDB3O75112 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
LDB3O75112 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
LDB3O75112 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
LDB3O75112 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LDB3O75112 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LDB3O75112 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.72■■□□□ 1.07
LDB3O75112 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LDB3O75112 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
LDB3O75112 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LDB3O75112 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
LDB3O75112 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.71■■□□□ 1.07
LDB3O75112 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LDB3O75112 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LDB3O75112 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LDB3O75112 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LDB3O75112 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
LDB3O75112 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LDB3O75112 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LDB3O75112 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.71■■□□□ 1.07
LDB3O75112 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.71■■□□□ 1.07
LDB3O75112 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
LDB3O75112 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.71■■□□□ 1.07
LDB3O75112 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
LDB3O75112 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
LDB3O75112 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LDB3O75112 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
LDB3O75112 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.7■■□□□ 1.06
LDB3O75112 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LDB3O75112 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LDB3O75112 Z92544.1-202ENST00000571933 1220 ntBASIC21.7■■□□□ 1.06
LDB3O75112 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.7■■□□□ 1.06
LDB3O75112 AC021242.3-201ENST00000607598 1377 ntBASIC21.7■■□□□ 1.06
LDB3O75112 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LDB3O75112 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
LDB3O75112 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.69■■□□□ 1.06
LDB3O75112 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LDB3O75112 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LDB3O75112 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
LDB3O75112 LINC00543-201ENST00000567234 1845 ntBASIC21.69■■□□□ 1.06
LDB3O75112 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LDB3O75112 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LDB3O75112 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
LDB3O75112 KRT125P-201ENST00000546827 989 ntBASIC21.69■■□□□ 1.06
LDB3O75112 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.69■■□□□ 1.06
LDB3O75112 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LDB3O75112 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.69■■□□□ 1.06
LDB3O75112 AC131274.2-201ENST00000580697 1507 ntBASIC21.69■■□□□ 1.06
LDB3O75112 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.69■■□□□ 1.06
LDB3O75112 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LDB3O75112 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.68■■□□□ 1.06
LDB3O75112 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LDB3O75112 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LDB3O75112 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
LDB3O75112 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LDB3O75112 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LDB3O75112 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.68■■□□□ 1.06
LDB3O75112 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.68■■□□□ 1.06
LDB3O75112 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.68■■□□□ 1.06
LDB3O75112 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.68■■□□□ 1.06
LDB3O75112 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LDB3O75112 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LDB3O75112 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
LDB3O75112 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
LDB3O75112 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LDB3O75112 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
LDB3O75112 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LDB3O75112 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.67■■□□□ 1.06
LDB3O75112 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LDB3O75112 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LDB3O75112 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LDB3O75112 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
LDB3O75112 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.66■■□□□ 1.06
LDB3O75112 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LDB3O75112 MIR4787-201ENST00000607364 84 ntBASIC21.66■■□□□ 1.06
LDB3O75112 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
LDB3O75112 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LDB3O75112 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LDB3O75112 AL022069.1-201ENST00000568025 1636 ntBASIC21.66■■□□□ 1.06
LDB3O75112 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
LDB3O75112 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms